BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944878
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31040.1 | Symbols: | CemA-like proton extrusion protein-re... 2187 0.0
> AT4G31040.1 | Symbols: | CemA-like proton extrusion protein-related
| chr4:15111477-15114126 REVERSE LENGTH=1896
Length=1896
Score = 2187 bits (1184), Expect = 0.0
Identities = 1316/1378 (96%), Gaps = 15/1378 (1%)
Strand=Plus/Plus
Query 1 GATTAAAGTCCAAACAATGTTGGGTTTGATTCATGTCCTTGATGAGCTCGTCAATGGTCT 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 GATTAAAGTCCGAACAATGTTGGGTTTGATTCATGTCCTTGATGAGCTCGTCAATGGTCT 273
Query 61 TATGCCACTGCTTATCATTCAGTAGTCAAAACCCAGTTCCTGAATC-T--TCTTCGTCTT 117
|||||||||||||||||||||||||||||||||||| ||||||||| | || || |||
Sbjct 274 TATGCCACTGCTTATCATTCAGTAGTCAAAACCCAGATCCTGAATCATCATCATCTTCTC 333
Query 118 TTCTTCGTTATAAGGCTTGTGACTCGATTTCGTTGTGGGGTAAGAGAAGGAAGAGGCTTT 177
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 334 TTCTTCGTTATAAGCCTTGTGATTCGATTTCGTTGTGGGGTAAGAGAAGGAAGAAGCTTT 393
Query 178 GGAGATTTGTTCCCAGTGCGGAGAAGAATAACAGTCATACGGG---TAATAATAAGAGGA 234
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 394 GGAGATTTGTTCCCAGTGCGGAGAAGAATAACAGTCATACGGGTAATAATAATAAGAGGA 453
Query 235 GAAGAAGCTGGTGGCAGAGGTTTTTCTTTGATGATGATGGGAATTGGCTTGGTTTGAGGG 294
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 454 GAAGAAGCTGGTGGCAGAGGTTTTTCTTTGATGATGATGGGAATTGGCTTGGTTTGAGAG 513
Query 295 ACGAGGACATTGTTGATGAGACTTCTGAGCTTGCAAAGGATGATGAGATGTCTGATGAAG 354
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 514 ACGACGACATTGTTGATGAGACTACTGAGCTTGCAAAGGATGATGAGATGTCTGATGAAG 573
Query 355 AGAAATTCGAGACTTGGAAGAGACGAGCTGAGGCGATTGTGGAGCTACGGGAAGGTCAGG 414
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 574 AGAAATTCGAGACTTGGAAGAGACGAGCAGAGGCGATTGTCGAGCTACGGGAAGGTCAGG 633
Query 415 AGGAGATTGGGGATAGTGGTGTTGTTGCTGATGTGACCAAGAAATGGGAGGATTGGATTG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 AGGAGATTGGGGATAGTGGTGTTGTTGCTGATGTGACCAAGAAATGGGAGGATTGGATTG 693
Query 475 TGGATTCAGATGATAGTTTAGTTGAGTCTTGGAGCCGAGACTCTGCTGGTAGTGAAGGAA 534
||||||||||||||||||| ||||||||||||| ||||||||||||| | || |
Sbjct 694 TGGATTCAGATGATAGTTTTGTTGAGTCTTGGACCCGAGACTCTGCT-G--GT------A 744
Query 535 GTGACGACAAATTAGAGCTCGATGAATTGACAATTCCAGACGGGGGGTTGGTTAAAATGG 594
|||||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 745 GTGACGACAATTTAGAGCTTGATGAATTGACAATTCCAGATGGAGGGTTGGTTAAAATGG 804
Query 595 TGAGGGATATGGTTTTAGGAGCAGAAGAGGAAGATATTCTATACGAAGACCGTGTTTTTC 654
||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||
Sbjct 805 TGAGGGATATGGTTTTAGGTGCAGAAGAGGAAGATATTCTTTACGAAGACCGTATTTTTC 864
Query 655 GTTATGCTTCTTCAAAATCGGCAAAGTTTTTGGCGGTATTAATCCTCATTCCATGGGCAT 714
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 865 GTTACGCTTCTTCAAAATCGGCAAAGTTTTTGGCGGTCTTAATTCTCATTCCATGGGCAT 924
Query 715 TAGACTTTTTGGCCCATGATTATGTACTTATGCCCTTCTTAGACAGATATGTGAAGACTG 774
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 925 TAGACTTTTTGGCTCATGATTATCTACTTATGCCCTTCTTAGACAGATATGTGAAGACTG 984
Query 775 TACCACTTGCTGCACAGACGCTTGATGTGAGACGAAATCAGAAGCTAGAAATGGTAAAGG 834
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 985 TACCACTTGCTGCCCAGACGCTTGATGTGAGACGAAATCAGAAGCTAGAAATGGTTAAGG 1044
Query 835 AACTTAATAGAGAAAAAGCTAGGTACCGTCTCGAAGTTGAGATTGGCAAATCTCCTCCTC 894
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 1045 AACTTAATAGAGAAAAAGCTAGGTACCGTCTTGAAGTTGAGATTGGCAAATCTCCGCCGC 1104
Query 895 TTTCTGACGATGAGCTATGGTGGGAGATGCGGGGTAAAGCTTTGGAGCTGCGAGATGAGT 954
||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1105 TTTCTGACGATGATTTATGGTGGGAGATGCGGGGTAAAGCTTTGGAACTGCGTGATGAGT 1164
Query 955 GGAGATTAGAGAACCGGAAAGCATTTGCCAACATATGGTCTGATATGGTGTTTGGGATCT 1014
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 GGAGACTAGAGAACCGGAAAGCATTTGCCAACATATGGTCTGATATGGTGTTTGGGATCT 1224
Query 1015 CCTTGTTTGTTCTTTTGTACGCCAATCAGGGTAGAGTAGCCTTGTTGAAATTTACGGGGT 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1225 CCTTGTTTGTTCTTTTGTACGCCAATCAGGGTAGAGTAGCCTTGTTGAAATTTACAGGAT 1284
Query 1075 ATAAAATCATAAACAACATTTCAGACACGGGAAAGGCATTTCTCATTATCTTGATAACCG 1134
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||
Sbjct 1285 ATAAAATCATAAACAACATTTCAGACACGGGAAAGGCATTTCTCATCATCCTGATCACCG 1344
Query 1135 ACATTTTCTTGGGGTACCATTCTGAATCTGGATGGGAGACATTGTTAGAGATAATAATGG 1194
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1345 ACATATTCTTGGGGTACCATTCTGAATCTGGATGGGAGACATTGTTAGAGATAATAATGG 1404
Query 1195 AACATTATGGTCTCGAAGTTGAGCAGTCTACTATTACCATTTTTATCTGCCTAGTTCCCG 1254
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1405 AACATTATGGTCTTGAAGTTGAGCAATCTACTATTACCATTTTTATCTGCCTAGTTCCCG 1464
Query 1255 TTATTATGGACGCTTGTGTTAAGCTCTGGCTCTTTAAGTTCCTTCCAAGACTGTCTCCGA 1314
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1465 TTATTATGGACGCTTGTGTTAAGCTCTGGCTGTTTAAGTTCCTTCCAAGACTGTCTCCGC 1524
Query 1315 GAGTTTCCAACATATTCCAGGAGATGAAACGTCACTGAGTAGTACCCACCATTGAAAC 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 GAGTTTCCAACATATTCCAGGAGATGAAACGTCACTGAGTAGTACCCACCATTGAAAC 1582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67569933570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5