BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944895
Length=1003
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30900.1 | Symbols: | DNAse I-like superfamily protein | ch... 1598 0.0
> AT4G30900.1 | Symbols: | DNAse I-like superfamily protein |
chr4:15039432-15042311 FORWARD LENGTH=1445
Length=1445
Score = 1598 bits (865), Expect = 0.0
Identities = 961/1005 (96%), Gaps = 15/1005 (1%)
Strand=Plus/Plus
Query 1 AAGAAG-AAGGAGACAAAACAATGAGTGTGTCTTTGAGTGTGATGTCATTCAATCTTCAC 59
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 AAGAAGAAAGGAGACAAAACAATGAGTGTGTCTTTGAGTGTGATGTCATTCAATCTTCAC 425
Query 60 GATGATCAACCTGAAGAAAGCCCTAATTCATGGCTCAAAAGGAAGGATTTATGTCTCACT 119
||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 426 GATGATCTACCTGAAGAAAGCCCTAATTCATGGCTCAAAAGGAAAGATTTGTGTCTCACT 485
Query 120 GTCATCACCAGTTACTCCCCCATTGTTCTCTGTACCCAACAAGGTGTGAAGTCTCAATTG 179
|||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 486 GTCATCACTAGTTACTCCCCCATTGTTCTCTGTACCCAACAAGGTGTGAAGTCGCAGTTG 545
Query 180 GATTATCTTCAGCAGGGGTTGCCAGCCTATGATCAATTTGGCATATCAAGAAAAGGACCT 239
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 546 GATTATCTTCAGCAGGGGTTGCCAGCCTATGATCAATTTGGCATATCAAGAACAGGACCT 605
Query 240 CAGGATGCTAATGATGAACACTGCACCATCTTCTTCAACAAGGAAAAAGTAGAGCTGCTA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 GGGGATGCTAATGATGAACACTGCACCATCTTCTTCAACAAGGAAAAAGTAGAGCTGCTA 665
Query 300 GAGGGTGGAACTTTTTGGCTGTCGGAGTCTCCCTCGGTCCCTGGAAGCACAGCATGGGGT 359
|||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||
Sbjct 666 GAGGGTGGAACTTTTTGGTTGTCAGAGTCTCCCTCGGTCCCTGGAAGCACGGCATGGGGT 725
Query 360 TCCGCAGTTCCTTGTATAGCGACATGGTTTACGACTGCCTACACATTCCAA-TTGAAAGG 418
||||||||||||||||||||||||| | | | || ||||||||| || |||||
Sbjct 726 TCCGCAGTTCCTTGTATAGCGACAT-G-----G---G-CT--ACATTCCAACTT-AAAGG 772
Query 419 AGCGGAGCCACCGGGATTTTCGTTCCAGATAGTCAACACAAACTTGGATGAAATCAGCCC 478
||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 773 AGCGGAGCCGCCTGGTTTTTCGTTTCAGATAGTCAACACAAACTTGGATGAAATCAGCCC 832
Query 479 TCGTGCCCGTAGGCGAAGTGCTTTACTCACATGGCAACACATAGCATCATTACCTCCCAC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TCGTGCCCGTAGGCGAAGTGCTTTACTCACATGGCAACACATAGCATCATTACCTCCCAC 892
Query 539 TTTGCCGGTTGTGTACTGTGGAGGATTCAACACACAGAAGGAATCAACAACAGGGCGATT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 893 TTTGCCGGTTGTGTACTGTGGAGGATTCAACACACAGAAGGAATCAACAACAGGGCGGTT 952
Query 599 TCTGTTGGGCAGATCTAGAGAGCACGGTGTGGTAGGGGACATGAGAGACGCATGGCCAAG 658
|||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 953 TCTGTTGGGCAGATCTAGAGAGCATGGTGTGGTAGGAGATATGAGAGACGCATGGCCAAG 1012
Query 659 TGCCCGAGTAAGAAAAAACGTCGCTCTCATAAGAACATACCATGATTTCAAAGGTGACAA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TGCCCGAGTAAGAAAAAACGTCGCTCTCATAAGAACATACCATGATTTCAAAGGTGACAA 1072
Query 719 GCAGGGAACTGTCGAGTTCTTGAAGCTGATATTCAGAGCGTTATGCCTCTGTTGGGACCG 778
||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1073 GCAGGGAACGGTCGAGTTCCTGAAGCTGATATTCAGAGCGTTATGCCTCTGCTGGGACCG 1132
Query 779 ACAGACACAAGATCTACATACAGATTGGATACTTTACAGAGGTAGATCTATAGTTCCTGT 838
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1133 ACAGACGCAAGATCTACACACGGATTGGATACTTTACAGAGGTAGATCTATAGTTCCTGT 1192
Query 839 AATGTGCGAGATCGTAAATGATAAGATTGACGACTTATATCCTTCATCTCACTACCCTGT 898
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1193 AATGTGCGAGATCGTAAATGATAAGATTGACGACTTGTATCCTTCATCTCACTACCCTGT 1252
Query 899 GTTTGCTGAGTTTATGCTTCCTCGTTCTGTAAGAATGCTTGAACCTACTCCTCCTGTTTC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 GTTTGCTGAGTTTATGCTTCCTCGTTCTGTAAGAATGCTTGAACCTACTCCTCCTGTTTC 1312
Query 959 TGCTCCTGCTCAAGCGGAAAGCTAGAACACATGTCCTCTCTTGCT 1003
|||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1313 TGCTCCTGCTCAAGAGGAAAGCTAGAACACATGTCCTCACTTGCT 1357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49128995766
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5