BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944896
Length=1695
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30890.1 | Symbols: UBP24 | ubiquitin-specific protease 24 |... 2772 0.0
> AT4G30890.1 | Symbols: UBP24 | ubiquitin-specific protease 24
| chr4:15036096-15039263 REVERSE LENGTH=2138
Length=2138
Score = 2772 bits (1501), Expect = 0.0
Identities = 1635/1700 (96%), Gaps = 7/1700 (0%)
Strand=Plus/Plus
Query 1 GTTGCGTTCTATGTGCCAAATATGAGTGAAAAGAAGCTATTTGTGTTTGGATCCTTTACA 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 175 GTTGCGTTCTATGTGCCAAATATGAGTGAAAAGAAGGTATTTGTGTTTGGATCCTTTACA 234
Query 61 GAACATGAAACTAGGTCATTTCTTGAGCAGAAACCCACTAAGGGTCCTCAGAA-TCATAA 119
||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || |||
Sbjct 235 GAACATGAAACTAGGTCATTTTTTGAGCAGAAACCCACTAAGGATCCTCAGAATTC-TAA 293
Query 120 AGACAAGTGTGTGGGAAGTATACAATTCGGCTCCTTGAATCTTGTTGCGGAAAATTCTTC 179
||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct 294 AGACAAGTGTGTGGGAAGTATTCAATTTGGCTCCTTGAATCTTGCTGCGGAAAATTCTTC 353
Query 180 GGTAAATACTAATGGCGAGTTGAAGAAAGGTCAGGCTGATGGGACAGTTAATTCTGCTGT 239
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 354 AGTAAATACTAATGGCGAGTTGAAGAAAGGTGAGGCTGATGGGACAGTTAAATCTGCTGG 413
Query 240 GTCTCAAGAGAGACTTGATGCTTCTAGACCTGCCAGCTCGGATAAGATCGATGATAATGA 299
||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||
Sbjct 414 GTCTCAAGAGAGACTTGATGCTTCTAGACCTGCCAGCTCGGATAAGAACAATGATAGTGA 473
Query 300 TGCTAAACTCCCAAGAAA-ACCCTCTTCAAGAGTTCCAGAGCATGTGGTAGAAAATGGAA 358
||| |||||||||||||| | ||||| ||||||||||||||||||||| |||||||||
Sbjct 474 TGCAAAACTCCCAAGAAAGA-ACTCTTTGAGAGTTCCAGAGCATGTGGTACAAAATGGAA 532
Query 359 TCATAAAAGAGATCTCTGAAAG---CAAATCTCTCAACAATGGTGTGGCGGTGAAAACAG 415
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 533 TCATAAAAGAGATCTCTGAAAGCAACAAATCTCTCAACAATGGTGTGGCGGTGAAAACAG 592
Query 416 ATCCTATTGGTTTGGATAAGTTGTGTATGTCAGATGGTGAAAATGATCCTGTGTATAAAG 475
||||||||||||||||||| |||| |||||| |||||||||| |||||||||||||||||
Sbjct 593 ATCCTATTGGTTTGGATAACTTGTCTATGTCTGATGGTGAAAGTGATCCTGTGTATAAAG 652
Query 476 CTTCGAGCTCTAAATTTCAAGCGCTGGACAATGAAGATTTCTCAAGTGACTCTTCATCTG 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 653 CTTCGAGCTCTAAATTTCAAGCGCTGGACAATGAAGATTTCTCAAGTGACTCTTCGTCTG 712
Query 536 GCAGCATTCAAAGAAAGAAAAACCAGAAGGTTCCTACTGAATCTGTTCCACCTGTTAAAG 595
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 713 GAAGCATTCAAAGAAAGAAAAACCTGAAGGTTCCTACTGAATCTGTTCCACCTGTTAAAG 772
Query 596 ACTTTACACCAAGAGGATTAATTAACGCTGGAAACTTGTGCTTCCTTAATGCAACACTGC 655
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
Sbjct 773 ACTTTACACCAAGAGGATTAATAAACGCTGGAAACTTGTGCTTCCTGAATGCAACACTAC 832
Query 656 AAGCGTTGCTTTCCTGTTCCCCTTTTGTGCAGCTCCTCCAGAGAATTCAACTCCAAGATA 715
||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 833 AAGCGTTGCTTTCATGTTCTCCTTTTGTGCAGCTCCTCCAGAAAATTCAACTCCAAGATA 892
Query 716 TTCCAAAGGCTGACTCTCCAACCTTAGCTGCATTTTCCGAGTTCATCTCCGAATTGGATG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TTCCAAAGGCTGACTCTCCAACCTTAGCTGCATTTTCCGAGTTCATCTCCGAATTGGATG 952
Query 776 TGCCAAGCAGTTCCAGCTTCAGAAATAATGTTACCGTTGTTGAGGCTGGTAGACCTTTTA 835
||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||
Sbjct 953 TGCCAAGCAGTTCCAGCATCAGAAATAACGTTACTGTTGTTGAGGCTGGTAGACCTTTTA 1012
Query 836 GACCTGCCATGTTCGAAGGAGTGCTTAGAAATTTTACCCCAGATGTACTCAACAACATGT 895
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1013 GACCTGCCATGTTCGAAGGAGTCCTTAGAAATTTTACCCCAGATGTACTCAACAACATGT 1072
Query 896 CTGGTAGGCCAAGGCAGGAAGATGCTCAGGAGTTTTTGAGTTTTATAATGGACCAAATGC 955
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1073 CTGGTAGGCCAAGGCAGGAAGATGCTCAAGAGTTTTTGAGTTTTATAATGGACCAAATGC 1132
Query 956 ATGATGAGTTGTTGAAACTCAAGGAACAGTCCCCCAAAGTTACTGCTTCTAAGTCATCGG 1015
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1133 ATGATGAGTTGTTGAAACTCAAGGAACAGTCCCCCAAAGTCACCGCTTCTAAGTCATCGG 1192
Query 1016 TTATTTCTTCTGCCAACGATGATGATGATGAATGGGAAACAGTTGGACCCAAAAACAAAT 1075
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1193 TTATTTCTTCTGCCAACGATGATGGTGATGAATGGGAAACAGTTGGACCCAAAAACAAAT 1252
Query 1076 CAGCTGTGACAAGAACACAAAGCTTTGTCCCGTCTGAGCTTAGTGAGATATTTGGCGGGC 1135
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1253 CAGCTGTGACAAGAACACAAAGTTTTGTTCCGTCTGAGCTTAGTGAGATATTTGGCGGGC 1312
Query 1136 AGCTCAAAAGCGTAGTGAAGGCAAAAGGGACTAAAGCTTCGGCTACTGTACAGCCATATC 1195
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1313 AGCTTAAAAGCGTAGTGAAGGCAAAAGGAACTAAAGCTTCGGCTACTGTACAGCCGTATC 1372
Query 1196 TCTTGCTACACCTTGATATTCATCCGGACGGCGTGAAAGGAATAGAAGACGCGTTGCATT 1255
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1373 TCTTGCTACACCTTGATATTCATCCGGACGGTGTGCAAGGAATAGAAGACGCGTTGCATT 1432
Query 1256 TGTTTTCTGCCCAAGAAGATCTTGAAGGATATAGAGCCTCGGTTACTGGGAAGACTGGTG 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 TGTTTTCTGCCCAAGAAGATCTTGAAGGATATAGAGCCTCGGTTACTGGGAAGACTGGTG 1492
Query 1316 TAGTGAGTGCTAGTAAGTCGATAAAGATACAGAAACTCTCAAAGATAATGATACTGCACC 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 TAGTGAGTGCTAGTAAGTCGATAAAGATACAGAAACTCTCAAAGATAATGATACTGCACC 1552
Query 1376 TAATGCGTTTTAGCTACGGAAGCCAAGGGAGTACTAAGCTGCATAAAGGCGTTAAATTTC 1435
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1553 TAATGCGTTTTAGCTACGGAAGCCAAGGGAGTACTAAGCTGCGTAAAGGCGTTAAATTTC 1612
Query 1436 CCCTTGAACTCAACTTAAACCGCAACCATCTTGTTTCTCTATCCAATGAGAGTTTGAGAT 1495
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1613 CCCTTGAACTCAACTTAAACCGCAGCCATCTTGTTTCTCTATCCAATGAGAGTTTGAGAT 1672
Query 1496 ATGAACTTGTGGCAACAATTACCCACCATGGATGGGATCCCTCAAAAGGGCACTACACCA 1555
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1673 ATGAACTTGTGGCAACAATTACCCACCACGGATGGGATCCCTCAAAAGGACACTACACCA 1732
Query 1556 CAGACGCTCGACGAAAGAATGGTCAATGGCTAAGGTTTGATGATGCGTCTGTGACTGCCA 1615
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1733 CAGATGCTCGACGAAAGAATGGTCAATGGCTAAGGTTTGATGATGCCTCTGTGACCCCCA 1792
Query 1616 TAGGGACAAAACAGGTGTTGCACGACCAAGCTTATGTCCTCTTCTACAAGCAAGTGTAAG 1675
|||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1793 TAGGGACAAAACTGGTGTTGCACGATCAAGCCTATGTCCTCTTCTACAAGCAAGTGTAAG 1852
Query 1676 TGATTCAAAGGCAGCAGATT 1695
|||||||||||||||||||
Sbjct 1853 AGATTCAAAGGCAGCAGATT 1872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83784709605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5