BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944897

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G30872.1 | Symbols:  | other RNA | chr4:15032978-15033256 RE...   161    3e-39
  ATCG00920.1 | Symbols: RRN16S.1 | chloroplast-encoded 16S ribos...  69.4    2e-11
  ATCG01210.1 | Symbols: RRN16S.2 | chloroplast-encoded 16S ribos...  69.4    2e-11


> AT4G30872.1 | Symbols:  | other RNA | chr4:15032978-15033256 
REVERSE LENGTH=279
Length=279

 Score =  161 bits (87),  Expect = 3e-39
 Identities = 95/99 (96%), Gaps = 0/99 (0%)
 Strand=Plus/Plus

Query  27   ATGGCGAAAGCTTCAGCAACAATTATCATTCTTTTGATCTTGTTCTGTTCTTTGGCTTGT  86
            |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGTGAAAGCTTCAGCAACAATCATCATTCTTTTGATCTTGTTCTGTTCTTTGGCTTGT  60

Query  87   GAGGCACGTGTTCGTCTCACTAGTCCTGATCTTCCGACT  125
            ||||||||||||||||||| |||||||||||||| ||||
Sbjct  61   GAGGCACGTGTTCGTCTCATTAGTCCTGATCTTCTGACT  99


> ATCG00920.1 | Symbols: RRN16S.1 | chloroplast-encoded 16S ribosomal 
RNA | chrC:101012-102502 FORWARD LENGTH=1491
Length=1491

 Score = 69.4 bits (37),  Expect = 2e-11
 Identities = 37/37 (100%), Gaps = 0/37 (0%)
 Strand=Plus/Plus

Query  292  ATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAAC  328
            |||||||||||||||||||||||||||||||||||||
Sbjct  17   ATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAAC  53


> ATCG01210.1 | Symbols: RRN16S.2 | chloroplast-encoded 16S ribosomal 
RNA | chrC:136147-137637 REVERSE LENGTH=1491
Length=1491

 Score = 69.4 bits (37),  Expect = 2e-11
 Identities = 37/37 (100%), Gaps = 0/37 (0%)
 Strand=Plus/Plus

Query  292  ATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAAC  328
            |||||||||||||||||||||||||||||||||||||
Sbjct  17   ATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAAC  53



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15281395696


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5