BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg944897 Length=328 Score E Sequences producing significant alignments: (Bits) Value AT4G30872.1 | Symbols: | other RNA | chr4:15032978-15033256 RE... 161 3e-39 ATCG00920.1 | Symbols: RRN16S.1 | chloroplast-encoded 16S ribos... 69.4 2e-11 ATCG01210.1 | Symbols: RRN16S.2 | chloroplast-encoded 16S ribos... 69.4 2e-11 > AT4G30872.1 | Symbols: | other RNA | chr4:15032978-15033256 REVERSE LENGTH=279 Length=279 Score = 161 bits (87), Expect = 3e-39 Identities = 95/99 (96%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 27 ATGGCGAAAGCTTCAGCAACAATTATCATTCTTTTGATCTTGTTCTGTTCTTTGGCTTGT 86 |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGTGAAAGCTTCAGCAACAATCATCATTCTTTTGATCTTGTTCTGTTCTTTGGCTTGT 60 Query 87 GAGGCACGTGTTCGTCTCACTAGTCCTGATCTTCCGACT 125 ||||||||||||||||||| |||||||||||||| |||| Sbjct 61 GAGGCACGTGTTCGTCTCATTAGTCCTGATCTTCTGACT 99 > ATCG00920.1 | Symbols: RRN16S.1 | chloroplast-encoded 16S ribosomal RNA | chrC:101012-102502 FORWARD LENGTH=1491 Length=1491 Score = 69.4 bits (37), Expect = 2e-11 Identities = 37/37 (100%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 292 ATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAAC 328 ||||||||||||||||||||||||||||||||||||| Sbjct 17 ATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAAC 53 > ATCG01210.1 | Symbols: RRN16S.2 | chloroplast-encoded 16S ribosomal RNA | chrC:136147-137637 REVERSE LENGTH=1491 Length=1491 Score = 69.4 bits (37), Expect = 2e-11 Identities = 37/37 (100%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 292 ATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAAC 328 ||||||||||||||||||||||||||||||||||||| Sbjct 17 ATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAAC 53 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15281395696 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5