BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944901
Length=1535
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30860.1 | Symbols: ASHR3, SDG4 | SET domain group 4 | chr4:... 2410 0.0
> AT4G30860.1 | Symbols: ASHR3, SDG4 | SET domain group 4 | chr4:15024472-15027616
FORWARD LENGTH=1757
Length=1757
Score = 2410 bits (1305), Expect = 0.0
Identities = 1451/1522 (95%), Gaps = 8/1522 (1%)
Strand=Plus/Plus
Query 3 TGTACTTACGAGTTTCA-GATGTTAGATCTGGGAAACATGTCTTTGTCTGCATCTGTGGC 61
||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 57 TGTACTTTCGAGTTT-AGGATGTTAGATCTGGGAAACATGTCTATGTCTGCATCTGTTGC 115
Query 62 TCTCACTTGTTGCCCTTCTTTTCTTCCGGCGGCTTCAGGCCCGGAATTATCCAAATCTAT 121
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 116 TCTCACTTGTTGCCCTTCTTTTCTTCCGGCGGCTTCAGGCCCTGAATTAGCCAAATCTAT 175
Query 122 CGATTCCCCTGAAAATATAGCCGGAGACTGCAATGGGAAGCATTCACCGATGATTCCACC 181
| ||||||| |||||| |||||||||| ||||||||||| |||| ||| |||||||||||
Sbjct 176 CAATTCCCCGGAAAATCTAGCCGGAGAATGCAATGGGAAACATTTACCAATGATTCCACC 235
Query 182 GGAGGAAGAGGT-TAGAGACATTAAAACTGCTAATGGAGTCACTGCTTTTACCGGGAAAC 240
|||||||||||| || |||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 236 GGAGGAAGAGGTCAAG-GACATTAAAATTGCTAATGGAGTCACTGCTTTTACCCGGAAAC 294
Query 241 AGAATCCGTCTGACAGAGTCAAGAAAGGG-TTGATTTTGGAAGATCATGTGAAGGATTGG 299
||||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||||
Sbjct 295 AGAATCCGTCTGACAGAGTCAAGAAAGGGTTTG-TCTTGGATGATCATGTGAAGGATTGG 353
Query 300 GTCAAGAGAAGAGTGGCTTCTGGTGTTTCAGAGACGAGATGTTGCCTCCCTTTTCTTGTT 359
||||||||||||||||||||||||||||||||| ||| ||||| ||| ||||||||||||
Sbjct 354 GTCAAGAGAAGAGTGGCTTCTGGTGTTTCAGAGTCGACATGTTTCCTTCCTTTTCTTGTT 413
Query 360 GGTGCCAAGAAAATGGTTGATTGTCTTGTTTGCCATAAGCCGGTGTCCCCGGGGGAAGAA 419
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 414 GGTGCCAAGAAAATGGTTGATTGTCTTGTTTGCCATAAGCCGGTGTACCCGGGGGAAGAC 473
Query 420 TTATCGTGTTCTGTTCGTGGCTGCCAAGGCGCTTATCACTCGCTTTGTGCGAAAGAAAGT 479
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TTATCGTGTTCTGTTCGCGGCTGCCAAGGCGCTTATCACTCGCTTTGTGCGAAAGAAAGT 533
Query 480 CTCGGGTTTTCTAAGTCAAGCAAATTTAGATGCCCTCAACATGAGTGTTTTGTCTGCAAG 539
|| || |||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 534 CTTGGTTTTTCTAAGTCAAGCAAATTTAAATGCCCTCAACATGAGTGCTTTGTCTGCAAG 593
Query 540 CAAAGAACACAATGGCGGTGTGTTAAGTGTCCAATGGCTGCTCATGATAAACATTCTCCA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 CAAAGAACACAATGGCGGTGTGTTAAGTGTCCAATGGCTGCTCATGATAAACATTCTCCA 653
Query 600 TGGTCAAAAGAAATACTTCACTTGAAAGACCAACCAGGAAGAGCAGTTTGTTGGAGGCAT 659
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 654 TGGTCAAAAGAAATACTTCACTTAAAAGACCAACCAGGAAGAGCAGTTTGTTGGAGGCAT 713
Query 660 CCAACTAATTGGCGGCTAGACACAAAGCATGCAGTTGCGCAGAGTGAGATGGAGGAAGTC 719
|||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 714 CCAACTGATTGGCGGCTAGACACAAAGCATGCAGTTGCACAGAGTGAGATTGAGGAAGTC 773
Query 720 TTTTGCCAGTTGCCTTTGCCATATGTGGAAGAGGAGTTTAAGATTGACTTAACATGGAAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 774 TTTTGCCAGTTGCCTTTGCCATATGTGGAAGAGGAGTTTAAGATTGACTTAGCATGGAAA 833
Query 780 GATTCTGTTGTGAAAGATGATCTGCCTCCTTATGTGCACATCAGACGCAATATTTACTTT 839
|||||||||||||| || |||| |||| ||||||||||||| ||||||||||||||| |
Sbjct 834 GATTCTGTTGTGAAGGAAGATCCGCCTTCTTATGTGCACATTAGACGCAATATTTACCTC 893
Query 840 GTAAAGAAGAAGCGTGATAATGCTAATGATGGTGTTGGGTGCACAAATTGTGGCCCTACT 899
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 894 GTTAAGAAAAAGCGTGATAATGCTAATGATGGTGTTGGGTGCACAAATTGTGGCCCTAAT 953
Query 900 TGCTG-TAGAAGCTGTGTTTGCAGGGTTCAATGCATAAGCTGTTCAAAAGGATGCAGATG 958
||| | |||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 954 TGC-GATAGAAGCTGTGTTTGCAGGGTTCAATGCATAAGCTGTTCAAAGGGATGCAGCTG 1012
Query 959 TCCTGAAACTTGTGGAAACAGACCATTCCGCAAAGAGAAGAAGATCAGAATTGTTAAGAC 1018
|||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1013 TCCTGAAAGTTGTGGAAACAGACCATTCCGCAAAGAGAAAAAGATCAAAATTGTTAAGAC 1072
Query 1019 TGAACATTGCGGTTGGGGAGTAGAGGCAGCAGAATCAATCAACAAAGAGGACTTCATTGT 1078
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1073 TGAACATTGCGGTTGGGGAGTTGAGGCAGCAGAATCAATCAACAAAGAGGACTTCATTGT 1132
Query 1079 CGAATACATTGGTGAAGTGATTAGTGATGCTCAATGTGAGCAAAGGCTTTGGGATATGAA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 CGAATACATTGGTGAAGTGATTAGTGATGCTCAATGTGAGCAAAGGCTTTGGGATATGAA 1192
Query 1139 ACACAAAGGCATGAAAGACTTTTACATGTGTGAGATTCAGAAAGACTTCACGATTGATGC 1198
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1193 ACACAAAGGCATGAAAGACTTTTACATGTGTGAGATTCAAAAAGACTTCACGATTGATGC 1252
Query 1199 CACCTTCAAAGGGAACGCCTCTCGGTTTCTAAATCACAGTTGCAACCCAAACTGTGTATT 1258
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1253 TACCTTCAAAGGGAACGCCTCTCGGTTTCTGAACCACAGTTGCAACCCAAACTGTGTATT 1312
Query 1259 GGAAAAGTGGCAAGTTGAAGGTGAGACCCGTGTAGGTGTCTTTGCAGCTCGTCAAATAGA 1318
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1313 GGAAAAGTGGCAAGTTGAAGGTGAGACCCGTGTGGGTGTCTTTGCAGCTCGTCAAATAGA 1372
Query 1319 AGCAGGAGAGCCACTTACATATGACTATAGATTTGTGCAGTTTGGTCCTGAAGTAAAGTG 1378
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1373 AGCAGGAGAGCCACTTACATATGACTACAGATTTGTGCAGTTTGGTCCTGAAGTAAAGTG 1432
Query 1379 CAATTGTGGTTCTGAAAACTGTCAAGGTTATCTTGGGACAAAGAGGAAAGAGCCAAACTG 1438
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1433 CAATTGTGGTTCTGAAAACTGTCAAGGTTATCTTGGGACAAAGAGGAAAGAACCAAACTG 1492
Query 1439 TTTGGCTGTATCTTGGGGAGCAAAACGCAGAAGAGTGTTTCACCGACCTTTAGCCCATAA 1498
||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |||
Sbjct 1493 TTTGGTTGTATCTTGGGGAGCAAAACGCAGAAGATTGTTTCACCGACCTATAGCCCGTAA 1552
Query 1499 ATTGCAGCAAGATTAGCTTCAA 1520
| ||||||||||||||| |||
Sbjct 1553 ACCGCAGCAAGATTAGCTGCAA 1574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75752622405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5