BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944913

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G30770.1 | Symbols:  | Putative membrane lipoprotein | chr4:...   822    0.0  


> AT4G30770.1 | Symbols:  | Putative membrane lipoprotein | chr4:14985641-14986872 
REVERSE LENGTH=1232
Length=1232

 Score =  822 bits (445),  Expect = 0.0
 Identities = 493/516 (96%), Gaps = 3/516 (1%)
 Strand=Plus/Plus

Query  1    TCCTTCCTTAGAATAATAATAATGCCTGTGCCAGATCCACGGGCGGGGCAGGCGTTCATC  60
            |||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  242  TCCTTCCTTAG---AATCATAATGCCTGTGCCAGATCCACGGGCGGGGCAGGCGTTCATC  298

Query  61   TGTCTCATTACATTATTTCTTTTCCTATCAATCGCGGTTGGAGGCGGTTGTCTAATTGCA  120
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  299  TGTCTCATTACTTTATTTCTTTTCCTATCAATCGCGGTTGGAGGCGGTTGTCTAATTGCA  358

Query  121  TACACAATCCTTCCTTACCCTCCAGTTTGGCTCTCCTACCTCGGCATTGTCTTTGTTTGT  180
            || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  359  TATACAATTCTTCCTTACCCTCCAGTTTGGCTCTCCTACCTCGGCATTGTCTTTGTTTGT  418

Query  181  CTCCCTTGGTTCTTTTGGATCCTAACCTTTGCATACCGCATTGTTTCACGCACTTTTGGA  240
            |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct  419  CTCCCTTGGTTCTTTTGGATCCTAACATTTGCCTACCGCATTGTTTCACGTACTTTTGGA  478

Query  241  TTTAGGATGGTCGTTGGATCCGGTGGTAACAATAACAACGCGAGTGGAGAATCCATGCCG  300
            ||||||||||| ||||||||||||||||| ||||||||||||| ||||||| ||||| ||
Sbjct  479  TTTAGGATGGTTGTTGGATCCGGTGGTAATAATAACAACGCGAATGGAGAAACCATGACG  538

Query  301  CGTGATCTTGACCCTCCTGAGCAATCTTTAGAATCTCCCGATGATGATGATCCAGAGACG  360
            |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| | 
Sbjct  539  CGTGATCTTGACCCTCCTGAGCAATCTTTAGAGTCTCCTGATGATGATGATCCAGAGCCA  598

Query  361  ATAGCTCACCCACAAGGCCAAGTTCTAGTGTCGATTGAAGGGAATCAATCGAAGAAACGA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  599  ATAGCTCACCCACAAGGCCAAGTTCTAGTGTCGATTGAAGGGAATCAATCGAAGAAACGA  658

Query  421  ATGTCAACCTCCAGCAATTCTACTATCGGTTCGCATGAAAGTGAGATGCCACTAGCCATT  480
            |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  659  ATGTCAACCTCCAGTAATTCTACTATCGCTTCGCATGAAAGTGAGATGCCACTAGCCATT  718

Query  481  TCTATGGGCTCATGATCATATATGTTTTGTTGACAC  516
            ||||||| ||||||||||||||||| ||||||||||
Sbjct  719  TCTATGGCCTCATGATCATATATGTCTTGTTGACAC  754



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24664966177


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5