BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944914
Length=712
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30750.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 518 4e-146
AT4G30730.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 346 2e-94
> AT4G30750.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G30730.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:14981186-14982354 REVERSE LENGTH=954
Length=954
Score = 518 bits (280), Expect = 4e-146
Identities = 534/649 (82%), Gaps = 47/649 (7%)
Strand=Plus/Plus
Query 9 TACGTCGAAACCATGTCCACTTTGGTCCCTTTGCTGCCCGCCAGCGAGAGATCCACACAT 68
||||||||||||||||||| ||| ||||||||| ||| |||| || || || | ||| |
Sbjct 74 TACGTCGAAACCATGTCCAGTTTCTTCCCTTTGCCGCCAGCCATCGGGAAAT-C-CAC-T 130
Query 69 GCATATGGA--GCG-CATG-ATGA-AA-CATTAGTCGTATGGGACATAGAGGACTACAAA 122
| || |||| ||| ||| || | || ||||||| ||||||| ||| ||||||||| |
Sbjct 131 GGATGTGGAGTGCGTGATGAATCACAATCATTAGTTGTATGGGCCATTGAGGACTACTCA 190
Query 123 ATCCCTGAAAGCATCGATCCTTG-TTTGATCAACTAT-AAAATCGCAAGAGCTATTGTC- 179
||||||||||| |||||||| || | ||||||||| | ||||||| || ||||||||||
Sbjct 191 ATCCCTGAAAGTATCGATCC-TGATATGATCAACT-TGAAAATCGAAACAGCTATTGTCA 248
Query 180 AAGCGTCCTCATATAAGGAT-GT---TGGAAGTGTCCATCTGGATTTTCGGTTCTGCTGA 235
|| | | || ||||| | || || |||| | | |||||||||||||||||||||
Sbjct 249 AAAAAT-TTAATTTAAGG-TCGTCGGCGGTAGTGACAACCTGGATTTTCGGTTCTGCTGA 306
Query 236 GAATGCATGGTTGACTGAATCGCAA-GACAAACTTTGGGAATCCGAGTTT-GAAGTCTGT 293
||||||||||||| || |||| ||| | ||||||||||||||||||||| || |||| |
Sbjct 307 GAATGCATGGTTGGCTAAATC-CAAAGTTAAACTTTGGGAATCCGAGTTTAGA-GTCTCT 364
Query 294 CTCCACAAAGGGG---ATAGACGTACCAGATTAAACATGAT-TCTAGCGGAAGTAATTTA 349
||||||||||||| ||| |||| |||||||||||||||| | |||| || || |||||
Sbjct 365 CTCCACAAAGGGGGGGATAAACGTGCCAGATTAAACATGATGT-TAGCAGACGTCATTTA 423
Query 350 CCATGTATGGAGCTTGGATGA-TCCAATAAATTTG-CTGGTACTCTCGGAAAACAAGGAG 407
||||||||| || ||| | ||||| ||||||| | ||||||| | ||||||||||||
Sbjct 424 TTATGTATGGAACT-GGAAGGCTCCAACAAATTTGGC-GGTACTCACAGAAAACAAGGAG 481
Query 408 AAGATGGAACAAGACCCCAAATTTTGCAGATTTCGTCAAGCTTTAGAAAACAAAGGTTTC 467
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 482 GAGATGGAACAAGACCCCAAATTTTTCAGATTTCGTCAAGCTTTAGAAAATAAAGGTTTC 541
Query 468 TTTGTTGCCTTAGCACACCCTGAGACACTCATTAACCAAGAAACTGCCGTTGAAGAGCCG 527
||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 542 TTTGTTGCCGTAGAACACCCTGAGACACTCATCAACCAAGAAACTGCCGTTGAAGACCCG 601
Query 528 CCAGATTT-TACCCCAATACCTTACTATCAAACCACAAGTGACAACACGCTTAAGCTAGC 586
|||||| | |||||||||||||||| | ||| | |||||||| | | ||||||||
Sbjct 602 CCAGATGACT-CCCCAATACCTTACTA-C---CCA-A-GTGACAACCCTCAAAAGCTAGC 654
Query 587 -TTACTGG-ACCAAAGAAGATGATGATGCTTTCAGATCTAA-TCATAAA 632
|| |||| || ||||||||| ||| |||| |||| |||| | |||||
Sbjct 655 GTT-CTGGTAC-AAAGAAGATTCTGAAGCTTACAGAGCTAAAT-ATAAA 700
> AT4G30730.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G30750.1);
Has 10 Blast hits to 10 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:14976418-14976732
REVERSE LENGTH=315
Length=315
Score = 346 bits (187), Expect = 2e-94
Identities = 242/268 (90%), Gaps = 6/268 (2%)
Strand=Plus/Plus
Query 371 TCCAATAAATTT-GCTGGTACTCTCGGAAAACAAGGAGAAGATGGAACAAGACCCCAAAT 429
||||| |||||| || ||||||| | |||||||||||| |||||||||||||||||||||
Sbjct 45 TCCAACAAATTTGGC-GGTACTCACAGAAAACAAGGAGGAGATGGAACAAGACCCCAAAT 103
Query 430 TTTGCAGATTTCGTCAAGCTTTAGAAAACAAAGGTTTCTTTGTTGCCTTAGCACACCCTG 489
||| |||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||
Sbjct 104 TTTTCAGATTTCGTCAAGCTTTAGAAAATAAAGGTTTCTTTGTTGCCGTAGAACACCCTG 163
Query 490 AGACACTCATTAACCAAGAAACTGCCGTTGAAGAGCCGCCAGATTT-TACCCCAATACCT 548
|||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 164 AGACACTCATCAACCAAGAAACTGCCGTTGAAGAGCCGCCAGATGACT-CCCCAATACCT 222
Query 549 TACTATCAA-ACCACAAGTGACAACACGCTTAAGCTAGCTTACTGGACCAAAGAAGATGA 607
||||||||| | ||||||||||||| |||||| | |||||||||| ||||||||||||
Sbjct 223 TACTATCAATATG-CAAGTGACAACACTCTTAAGTTGGCTTACTGGAGCAAAGAAGATGA 281
Query 608 TGATGCTTTCAGATCTAATCATAAAGAA 635
||| |||||||||||||| ||| |||||
Sbjct 282 TGAAGCTTTCAGATCTAAACATGAAGAA 309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34510858989
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5