BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944922

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G30660.1 | Symbols:  | Low temperature and salt responsive p...   388    1e-107


> AT4G30660.1 | Symbols:  | Low temperature and salt responsive 
protein family | chr4:14955373-14956118 FORWARD LENGTH=496
Length=496

 Score =  388 bits (210),  Expect = 1e-107
 Identities = 242/257 (94%), Gaps = 4/257 (2%)
 Strand=Plus/Plus

Query  3    TCTCATATCTCTGAAAAAATGCCGAGCAACTGTGAGATTCTCTGCGAGATCATTATCGCG  62
            |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  80   TCTCATCTCTCTGAAAAAATGCCGAGCAACTGTGAGATTCTGTGCGAGATCATTATCGCG  139

Query  63   ATCCTTCTTCCTCCTCTCGGAGTTTGCCTCAGGAAAGGATGTTGCACTGTGGAGTTTTTG  122
            ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct  140  ATCCTTCTTCCTCCTCTCGGAGTTTGCTTCAGGAAAGGATGCTGCACTGTGGAGTTTTTG  199

Query  123  ATTTGCCTGGTATTGACTATCTTAGGCTATGTCCCTGGGATAATATATGCAATATACGTG  182
            || |||||||| ||||| ||||||||||||||||| |||||||||||||| || ||||||
Sbjct  200  ATATGCCTGGTGTTGACGATCTTAGGCTATGTCCCGGGGATAATATATGCGATTTACGTG  259

Query  183  ATTGTGTTTCAGAACCGTGAAGAGTACTTTGATGAATACAGACGCCCTC-TCTACTCTGC  241
            |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct  260  ATTGTGTTTCAGCACCGTGAAGAGTACTTTGATGAATACAGACGCCC-CATCTACTCTGC  318

Query  242  TTGATATCTCTGTTTCT  258
            ||||| | |||||||||
Sbjct  319  TTGAT-T-TCTGTTTCT  333



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12265330756


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5