BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944923
Length=276
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30650.1 | Symbols: | Low temperature and salt responsive p... 388 1e-107
> AT4G30650.1 | Symbols: | Low temperature and salt responsive
protein family | chr4:14954320-14954968 FORWARD LENGTH=575
Length=575
Score = 388 bits (210), Expect = 1e-107
Identities = 242/257 (94%), Gaps = 4/257 (2%)
Strand=Plus/Plus
Query 5 TCTTCTTC-TTCTCATCTCTAAGAAAAATGGCGAGCAACATGGAAGTTTTCTGTGAGATC 63
|||||||| || ||||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 58 TCTTCTTCACTCACATCTCTGA-AAAAATGGCGAGCAACATGGAAGTTTTCTGCGAGATC 116
Query 64 TTAATCGCTATCCTTCTTCCACCTCTTGGAGTTTGTCTCAAACGTGGCTGTTGCACTGTA 123
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TTAATCGCGATCCTTCTTCCACCTCTTGGAGTTTGTCTCAAACGTGGCTGTTGCACTGTA 176
Query 124 GAGTTCTTGATTTGCTTAGTGCTGACAATCTTAGGATACATCCCAGGGATAATTTATGCA 183
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GAGTTCTTGATTTGCTTGGTGCTGACAATCTTAGGATACATCCCAGGGATAATTTATGCA 236
Query 184 CTTTACGTGATCGTGTTTCAAAACCGTGAAGGCTCTCAC-GAACTCGGAGCACCACTCAA 242
|| ||||||||||||||||||||||||||||||||| || ||||| ||||| ||||| ||
Sbjct 237 CTATACGTGATCGTGTTTCAAAACCGTGAAGGCTCT-ACCGAACTTGGAGCTCCACTTAA 295
Query 243 CTCAGCTTGATCTCTTT 259
||||||||||||| |||
Sbjct 296 CTCAGCTTGATCTGTTT 312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12667472748
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5