BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944925
Length=754
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30630.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1133 0.0
> AT4G30630.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G57910.1);
Has 33 Blast hits to 33 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:14950638-14952376
FORWARD LENGTH=1341
Length=1341
Score = 1133 bits (613), Expect = 0.0
Identities = 712/759 (94%), Gaps = 10/759 (1%)
Strand=Plus/Plus
Query 1 AAATTCACTGAGCGGATCCGATGAAGGAGACTAATTTCGTCTCCTCTGCTTCTTGTGGCG 60
||||||||||| |||||||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct 391 AAATTCACTGAACGGATCCGATGAAGAAGACTAATTTCGTTTCCTCTGCTTCCGGTGGCG 450
Query 61 ATCCCATGATCAGATTCACCCTTATGCAGCAGGTTCTGGAGTTGGAAAAGGAATTAGAAG 120
|||||||||||||||| | |||| || ||||||||||||||||||||||||||||| ||
Sbjct 451 ATCCCATGATCAGATT-AACCTT-TG-TGCAGGTTCTGGAGTTGGAAAAGGAATTAG-AG 506
Query 121 -TAAAGAGAAAGAAATTGGAGATGATTAAACAAAAAAGATTGACCCTCAAGTCAGAAGTT 179
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 507 ATAAAGAGAAAGAGATTGGAGATGATTAAACAAAAGAGATTGACCCTCAAGTCAGAAGTT 566
Query 180 AGGTTCTTGAGACGTAGATACGAGCACTTGAAGCAAGACCAAACTCTTGAAACATCTCCA 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 567 AGGTTCTTGAGACGTAGATACGAGCACTTGAAGCAAGATCAAACTCTTGAAACCTCTCCA 626
Query 240 AATATGTTGAGATTGTCAGAATCTGGGGGTTCAGAGGTCCCAAGGAAACCAAGTGGCGAA 299
| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 627 GAGATGTTGAGATTGTCAGAATCCGGGGGTTTAGAGGTCCCAAGGAAACCAAGTGGCGAA 686
Query 300 AGGAAGAAGCACTCTGGTGTGAGAGCATCTGTGCCATGTTCTGATTTGAAACAGAAGAAT 359
|| |||||||| |||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct 687 AGAAAGAAGCAGTCTGGTGTGAGAGCATCTGTACCATGTTTTGATTTGAAACTGAAGAAT 746
Query 360 ACAATTTGCAATGAGAAGGAAGCATTGGCTAATAATG---CAAGTTGTGACTTGGAAAAG 416
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 747 ACAATTTGCAATGAGAAGGAAGCATTGGCTAATAATGTTGCAAGTTGTGACTTGGATAAG 806
Query 417 AAGCGAAGAAGGAGCAGAGGAAACGAGGTTTTGACAATTCCC-GTTTCACTTCCTGACCT 475
||||||| |||||||||||||| ||| ||||||||| ||||| |||||||||||||||||
Sbjct 807 AAGCGAAAAAGGAGCAGAGGAAGCGATGTTTTGACA-TTCCCCGTTTCACTTCCTGACCT 865
Query 476 TAACGGAGAGGGAAACACTTCTGTCACCGACAAAGTCCCAGGCTTTGACCTAAACCAGAT 535
||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||
Sbjct 866 TAACGGAGAGGGAAACACTTCTGGCACTGACAAAGTCCCTGGCTTTGACCTAAACCAGAT 925
Query 536 CTCGAGAGAAGAAGAGGAACCGGCAGTGAATGGTGAACATATGGTCGTGGAAGCAATGAA 595
|||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||
Sbjct 926 CTCGAGAGAAGAAGAGGAGCCGGAAGTGAATGGTGAACATATGGTCGCGGAAGCAATGAA 985
Query 596 GAATGCAATGCGTGATAACAGAATCAGTGATCTACATGGCGAAAGAAAGTTACCAATTTG 655
||||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||||
Sbjct 986 GAATGCAATGCTTGATAACAGGATCAGTGATCTACATGTTGAAAGAAAGTTACCCATTTG 1045
Query 656 CGGAGATGTGGAGAAAGAGTTAAACAGAGCAGTGAAGAGGAAGGTTACATGGCAAGATCC 715
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1046 CGGAGATGTGGAGAAAGAGTTAAATAGAGCAGTGAAGAGGAAGGTTACATGGCAAGATCC 1105
Query 716 AGTGGCTTTAAGTGTTTAGGGTTTTTAGTATGAAATAGG 754
|||||||||||||||||||||| ||||||||||||||||
Sbjct 1106 AGTGGCTTTAAGTGTTTAGGGTGTTTAGTATGAAATAGG 1144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36620693163
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5