BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944926
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30620.1 | Symbols: | Uncharacterised BCR, YbaB family COG0... 845 0.0
AT2G24020.1 | Symbols: | Uncharacterised BCR, YbaB family COG0... 444 5e-124
> AT4G30620.1 | Symbols: | Uncharacterised BCR, YbaB family COG0718
| chr4:14948586-14950072 REVERSE LENGTH=718
Length=718
Score = 845 bits (457), Expect = 0.0
Identities = 540/578 (93%), Gaps = 13/578 (2%)
Strand=Plus/Plus
Query 15 AGGAGAAGAATGGCTTCGACGGCTTCG-ACTACTGATTTCTTCAAGCCTTTGCTTTCTCC 73
||||||| |||||||||||||||| || || ||||||||||||||| |||||||||||||
Sbjct 29 AGGAGAACAATGGCTTCGACGGCTACGAAC-ACTGATTTCTTCAAGACTTTGCTTTCTCC 87
Query 74 TTTCTCCAATGGGAATGCGGCGCAACGAA-TCAGTAGACAGAACGTGGTATGGTTAAATC 132
|||||| |||||||||||||||||||||| | |||||||||||| | || ||||||||||
Sbjct 88 TTTCTCAAATGGGAATGCGGCGCAACGAAGT-AGTAGACAGAACATTGTTTGGTTAAATC 146
Query 133 GAAAG-AATTCTGGAAATAATCAAAGTC-GATCTCTTCGTGTTAATGGATTATTCGGAGG 190
| ||| || |||||||||||| || | |||||||||||||||||||||||||||||||
Sbjct 147 GGAAGCAA-TCTGGAAATAAT--AA--CAGATCTCTTCGTGTTAATGGATTATTCGGAGG 201
Query 191 TGGAAAAAAGGACAACAAAGAGGATGGACAATCAAAGGCAGGTATACTTGGTAACATGCA 250
|||||||||||||| |||||||||||||||||||||||||| || || |||||||||||
Sbjct 202 CGGAAAAAAGGACAATAAAGAGGATGGACAATCAAAGGCAGGAATTCTAGGTAACATGCA 261
Query 251 GAATTTGTATGAGACTGTGAAGAAAGCTCAAATGGTTGTTCAAGTAGAGGCTGTTAGAGT 310
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 GAATTTGTATGAGACAGTGAAGAAAGCTCAAATGGTTGTTCAAGTAGAGGCTGTTAGAGT 321
Query 311 GCAGAAGGAGCTTGCTGTTGCTGAATTTGATGGTTATTGTGAAGGCGAGCTTGTCAAGGT 370
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 322 GCAGAAGGAGCTTGCTGTTGCTGAATTTGATGGTTATTGTCAAGGCGAGCTTGTCAAGGT 381
Query 371 TACATTATCAGGTAACCAGCAACCAATTCGCACTGATATCACTGATGCAGCAATGGAATT 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 382 TACATTATCAGGTAACCAGCAACCAATTCGCACTGATATCACTGATGCAGCAATGGAGTT 441
Query 431 AGGCTCCGAAAAACTTTCACTACTGGTCACAGAAGCATACAAGGAAGCTCATGCTAAA-A 489
||| || |||||||||||||| |||||||||||||||||||| || || ||| | ||| |
Sbjct 442 AGGTTCTGAAAAACTTTCACTGCTGGTCACAGAAGCATACAAAGACGCACATTC-AAAGA 500
Query 490 GTGTACTGGCTATGAAAGAAAGAATGAGTGATCTTGCGCAGAGCTTAGGGATGCCACCGG 549
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 501 GTGTACTGGCTATGAAAGAAAGAATGAGTGATCTTGCGCAGAGCTTAGGGATGCCACCAG 560
Query 550 GCCTTGATGGATTAAAGTAACAAAACCTAATCtttttt 587
|||||||||||||||||||||||||| |||||||||||
Sbjct 561 GCCTTGATGGATTAAAGTAACAAAACTTAATCTTTTTT 598
> AT2G24020.1 | Symbols: | Uncharacterised BCR, YbaB family COG0718
| chr2:10217701-10219352 REVERSE LENGTH=800
Length=800
Score = 444 bits (240), Expect = 5e-124
Identities = 345/395 (87%), Gaps = 9/395 (2%)
Strand=Plus/Plus
Query 162 TCTCTTCGTGTTAATGGATTATTCGGAGGTGGAAA-AAAGGACAACAA-A--GAGGATGG 217
|||||||| || ||||||||||| ||||||||||| ||| || || || | || |||||
Sbjct 219 TCTCTTCGAGTGAATGGATTATTTGGAGGTGGAAACAAA-GATAATAACAGTGAAGATGG 277
Query 218 ACAATCAAAGGCAGGTATACTTGGTAACATGCAGAATTTGTATGAGACTGTGAAGAAAGC 277
||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||||
Sbjct 278 ACAATCAAAGGCAGGAATATTTGGTAATATGCAGAATATGTATGAGACTGTGAAGAAAGC 337
Query 278 TCAAATGGTTGTTCAAGTAGAGGCTGTTA-GAGTGCAGAAGGAGCTT-GCTGTTGCTGAA 335
|||||||||||||||||| || ||||| | | || || || ||| || |||| || |||
Sbjct 338 TCAAATGGTTGTTCAAGTGGAAGCTGT-ACGTGTTCAAAAAGAG-TTAGCTGCCGCAGAA 395
Query 336 TTTGATGGTTATTGTGAAGGCGAGCTTGTCAAGGTTACATTATCAGGTAACCAGCAACCA 395
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 396 TTTGATGGTTATTGTGCAGGCGAGCTTGTCAAGGTTACGTTATCAGGTAACCAGCAACCA 455
Query 396 ATTCGCACTGATATCACTGATGCAGCAATGGAATTAGGCTCCGAAAAACTTTCACTACTG 455
|| || |||||||| || || |||||||||||| |||| ||||||||||| |||| |||
Sbjct 456 ATCCGTACTGATATTACCGAGGCAGCAATGGAACTAGGTTCCGAAAAACTATCACAACTT 515
Query 456 GTCACAGAAGCATACAAGGAAGCTCATGCTAAAAGTGTACTGGCTATGAAAGAAAGAATG 515
|||||||||||||||||||| || || || || ||||| ||||||||||||| ||||||
Sbjct 516 GTCACAGAAGCATACAAGGACGCACACGCCAAGAGTGTGGTGGCTATGAAAGAGAGAATG 575
Query 516 AGTGATCTTGCGCAGAGCTTAGGGATGCCACCGGG 550
||||| ||||||||||||||||| |||||||||||
Sbjct 576 AGTGACCTTGCGCAGAGCTTAGGAATGCCACCGGG 610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28432527202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5