BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944929
Length=595
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30590.1 | Symbols: ENODL12, AtENODL12 | early nodulin-like ... 800 0.0
> AT4G30590.1 | Symbols: ENODL12, AtENODL12 | early nodulin-like
protein 12 | chr4:14935623-14936562 REVERSE LENGTH=803
Length=803
Score = 800 bits (433), Expect = 0.0
Identities = 546/596 (92%), Gaps = 25/596 (4%)
Strand=Plus/Plus
Query 4 AAG-AAAAAGTCCAAAAAATGGGAATCATAGTTCCAGTTTTGACCCTTGTCTTCCTCTTA 62
||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 76 AAGTAAAAAATCCAAATTATGGGAATCATAGTTCCAGTTTTGACCCTTGTCTTCCTCTT- 134
Query 63 G-TTACGAAAGTGAGCCATGGTGCCTCCAATCCTAGGGTGATTCTGGTCGGTGGATCTGT 121
| || | |||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 135 GTTTGCTAAAGTGAGCCATGGTGCCTCCAATCCTAGGGTGATTCTAGTTGGTGGATCTGT 194
Query 122 GGGATCGTGGAAGGTTCCTGATTCTCCCAACAACACTCTCAATCACTGGGCCGAGAACAA 181
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 195 GGGATCATGGAAGGTTCCTGATTCTCCTAACAACACTCTCAATCACTGGGCCGAGAACAA 254
Query 182 TCGTTTCAAAGTCGGCGACTTCATCGTGTGGAAGTACGACATGAAAGTAGATTCGGTACT 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 CCGTTTCAAAGTCGGCGACTTCATCGTGTGGAAGTACGACATGAAAGTAGATTCGGTACT 314
Query 242 ACAAGTGACAAAAGAAGATTACGAGA-CTTGTAACACAGCAAATCCCTTGAAGCAATATA 300
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
Sbjct 315 ACAAGTGACAAAAGAAGATTACGAGAGC-TGTAACACAGCAAATCCCTTGAAGCAATACA 373
Query 301 ATGATGGAGACACTAAGGTTGAGCTTGACAAATCTGGCCCTTATTTCTTCATTAGTGGTG 360
|||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 374 ATGATGGAAACACTAAGGTTGCGCTTGACAAATCTGGCCCTTACTTCTTCATTAGTGGTG 433
Query 361 CTCCTGGTAACTGCGCTAAAGGCGAAAAGATTACCCTTGTTGTTTTGGCTGAACGCAAAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 CTCCTGGTAACTGCGCTAAAGGCGAAAAGATTACCCTTGTTGTTTTGGCTGAACGCAAAT 493
Query 421 CCGGTGGTGGT-G--GC-GC--T--C-CTC--A-GGTTTCTCCTG--A-T---ACGGCTC 462
|||||||||| | || || | | ||| | ||||||||||| | | |||||||
Sbjct 494 CCGGTGGTGGCAGCAGCAGCGGTGACGCTCCTAAGGTTTCTCCTGTTAGTCCTACGGCTC 553
Query 463 AAACTCCATCTCCAGCTCCAGCTCCAGGTGCCGCTCATAACGCTGCGGCTGGA-TTGAAG 521
|||||||| |||||||||| | ||||| ||| || ||||||||||||| ||| ||||||
Sbjct 554 AAACTCCAGCTCCAGCTCCCGGTCCAGCTGCAGCCCATAACGCTGCGG-TGGGGTTGAAG 612
Query 522 GTTGGAAGCGGTTGGTTCTTGACCGCAGTCGTGATTGGTTTGGCCATGGCTTAGAG 577
|||| |||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 613 GTTGCAAGCGGTTGGTTCTTGACCGCAGTCGTGGTTGGTTTGGCTATGGCTTAGAG 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28633463790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5