BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944932
Length=961
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30570.1 | Symbols: | Glucose-1-phosphate adenylyltransfera... 1050 0.0
> AT4G30570.1 | Symbols: | Glucose-1-phosphate adenylyltransferase
family protein | chr4:14930677-14931951 REVERSE LENGTH=1025
Length=1025
Score = 1050 bits (568), Expect = 0.0
Identities = 650/690 (94%), Gaps = 4/690 (1%)
Strand=Plus/Plus
Query 267 ACTAACTGCGCTGAAGCTTCAATTATGGTGACCAAGGTTGATGATCCTTCTAAGTATGGT 326
|||||| | |||||||| ||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 322 ACTAACCGTGCTGAAGCATCAATCATGGTGACCGAGGTTGATGATCCTTCTAAGTATGGT 381
Query 327 GTGGTGGTTACGGACGAAGGTACAGCGAGAGTTGAAAGTTTTGTAGAGAAACCGGAACAT 386
||||||||||| || ||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 382 GTGGTGGTTACAGAGGAAGGTACAGCGAGAGTTGAAAGTTTTGTCGAGAAACCGAAACAT 441
Query 387 TTTGTGGGGAACAAGATTAACGCTGGGATATACCTCTTGAACCCATCTGTTCTCGACAGG 446
||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||
Sbjct 442 TTTGTGGGGAACAAGATCAACGCTGGGATATACCTCTTGAGCCCATCTGTTCTTGACAGG 501
Query 447 ATTGAGCTGAGACGGACTTCGATAGAGAAAGAGATATTCCCTAAGATAGCTTCAGAGAAG 506
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 ATTGAGCTGAGAAGGACTTCGATAGAGAAAGAGATATTCCCTAAGATAGCTTCAGAGAAG 561
Query 507 AAGCTTTACGCGATGGTACTACCTGGTTTTTGGATGGACATTGGTCAACCGAAAGATTAC 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 AAGCTTTACGCGATGGTACTACCTGGTTTTTGGATGGACATTGGTCAACCGAAAGATTAC 621
Query 567 ATAACTGGGCAAAGAATGTACCTTAACTCCCTAAGAGAGAAAGCTCCGCAAGATTTGGCT 626
||||| ||||||||||||||||||||||| |||||||||||| |||||||||| ||||
Sbjct 622 ATAACCGGGCAAAGAATGTACCTTAACTCTCTAAGAGAGAAAACTCCGCAAGAACTGGCC 681
Query 627 ACAGGGGATAACATATTCGGGAATGTTCTTGTGGAC-AAGAGTGCGGTTATAGGAGAAGC 685
||||||||||||||| ||||||||||||| ||| || || |||||||||||||||||||
Sbjct 682 ACAGGGGATAACATAATCGGGAATGTTCTCGTGCACGAA-AGTGCGGTTATAGGAGAAGG 740
Query 686 TTGCTTGATTGGACCTGATGTGGTGATTGGTCCGGGATGTGTGATTGATTCAGGTGTAAG 745
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TTGCTTGATAGGACCTGATGTGGTGATTGGTCCGGGATGTGTGATTGATTCAGGTGTAAG 800
Query 746 ATTGTTTGGTTGTACTGTAATGCGCGGTGTTTGGATCAAGGAACATGCGAGTATCTCTAA 805
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 801 ATTGTTTGGTTGTACTGTAATGCGCGGTGTGTGGATCAAGGAACATGCGTGTATCTCTAA 860
Query 806 TAGTATTGTGGGATGGGATTCGACTGTTGGTAAA-TGGGCTCGGGTTGTTAACATAACGG 864
|||||| |||||||||||||| || ||||| || |||||||| ||| |||| |||||||
Sbjct 861 TAGTATCGTGGGATGGGATTCAACCGTTGG-AAGGTGGGCTCGAGTTTTTAATATAACGG 919
Query 865 TTCTTGGCAAAGATGTTCACGTCGCCGATGCAGAGGTTTACAACAGCGGGGTTGTTATCG 924
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 920 TTCTTGGCAAAGATGTTAACGTCGCCGATGCAGAGGTTTACAACAGTGGGGTTGTTATCG 979
Query 925 AAGAGCAAGGTCTGTGAAACCCGAGCCTAG 954
||||||||||||||||||||| ||||||||
Sbjct 980 AAGAGCAAGGTCTGTGAAACCAGAGCCTAG 1009
Score = 388 bits (210), Expect = 4e-107
Identities = 220/225 (98%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 42 ATTGAAGCTCTAAAAGCTGCTGGAGTGACTGAAGTTGTATTAGCTATCAATCACCAACAA 101
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 ATTGAAGCTCTAAAAGGTGCTGGAGTGACTGAAGTTGTATTAGCTATCAATCACCAACAA 111
Query 102 CCAGAGGTCATGTTGAATTTTGTGAAAGAATATGAGAAGAAGCTAGAGATTAAGATTACA 161
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 CCAGAGGTCATGTTGAACTTTGTGAAAGAATATGAGAAGAAGCTAGAGATTAAGATTACA 171
Query 162 TTTTCCCAGGAAACTGAACCGCTTGGGACAGCAGGGCCTCTCGCGCTGGCTCGGGATAAG 221
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 172 TTTTCCCAAGAAACTGAACCGCTTGGAACAGCAGGGCCTCTCGCGCTGGCTCGGGATAAG 231
Query 222 CTGGTCGATGAATCAGGCCAACCCTTTTTTGTACTTAACAGCGAT 266
||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 232 CTGGTCGATGAATCAGGCCAACCCTTTTTTGTACTAAACAGCGAT 276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47019161592
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5