BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944939
Length=979
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30510.1 | Symbols: ATATG18B, ATG18B, G18B | homolog of yeas... 1609 0.0
> AT4G30510.1 | Symbols: ATATG18B, ATG18B, G18B | homolog of yeast
autophagy 18 (ATG18) B | chr4:14905137-14907591 REVERSE
LENGTH=1261
Length=1261
Score = 1609 bits (871), Expect = 0.0
Identities = 943/979 (96%), Gaps = 0/979 (0%)
Strand=Plus/Plus
Query 1 GAGCTTTTGTTATTGTTGAGATGTTGTATAGCTCAGATCTACTTGCCATTGTTGGTGCTG 60
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 141 GAGCCTTTGTTATTGTTGAGATGTTGTATAGCTCAGATCTACTTGCAATTGTTGGAGCTG 200
Query 61 GTGAACAGGCTTCTCTATCCCCACGGCGTCTTTGTTTGTTCAAGACCACAACGGGTTTAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 GTGAACAGGCTTCTCTATCCCCACGGCGTCTTTGTTTGTTCAAGACCACAACGGGTTTAC 260
Query 121 CTCTTAGGGAATTGAACTTTTTAACTTCTATACTCGCTGTCCGTATGAACAAGAAAAGAC 180
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 261 CTCTTAGGGAATTGAATTTTTTAACTTCTATACTCGCTGTTCGTATGAACAAGAAAAGAC 320
Query 181 TTGTTGTTGTGCTGCTAGAGAAAACATTCGTTTACGACTTGAATACTCTTGTCATGCTTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 TTGTTGTTGTGCTGCTAGAGAAAACATTCGTTTACGACTTGAATACTCTTGTCATGCTTG 380
Query 241 ATACTATCTATACCGTGCCAAATCCTAAAGGTCTATCTGCATTCTCTCCATCTCTTGAAG 300
|||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 381 ATACTATCGACACCGTGCCAAATCCAAAAGGTCTATCTGCATTCTCTCCATCTCTTGAAG 440
Query 301 GCTGCTACTTAGCTGTTCCAGCTAGTGCGACGAAAGGGTCGGTTTTGGTGTATAACGTCA 360
|||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct 441 GCTGCTACTTAGCTGTTCCAGCTAGTACGACGAAAGGATCTGTTTTGGTGTATAACGTCA 500
Query 361 TGGATTTGCAGTCTCATAGTGAGATAGATGCACATCGTTCTCCATTGGCTGCGATTGCAC 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 501 TGGATTTGCAGTCTCATAGTGAGATTGATGCACATCGTTCTCCATTGGCTGCGATTGCAC 560
Query 421 TCTCATCAAATGGAATGTACATTGCTACAGCTTCTGAGCAAGGAACCTTGATCCGAGTCC 480
| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 561 TGTCTTCAAATGGAATGTACATTGCTACAGGATCTGAGCAAGGAACCTTGATCCGAGTCC 620
Query 481 ATCTTGTTTCGGAAGCAACTAAGTCATATAGTTTCAGGAGAGGAACATACCCATCTACTA 540
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 ATCTTGTTTCAGAAGCAACTAAGTCATATAGTTTCAGGAGAGGAACATACCCATCTACTA 680
Query 541 TATACTCACTGTCTTTTGGACCATCGACACAGCTTCCGGATATATTAATTGCAACGAGTT 600
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 681 TATATTCACTGTCTTTTGGACCATCGACACAGCTTCCAGATATATTAATTGCAACTAGTT 740
Query 601 CTTCAGGCTCCATTCATGCCTTCTCTTTAAGTTTGGCCATAAACCAAAGAAGCAAAAGGT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CTTCAGGCTCCATTCATGCCTTCTCTTTAAGTTTGGCCATAAACCAAAGAAGCAAAAGGT 800
Query 661 CTACCAGCTTTCTTGGATCAGTTCTTCCGGACAGCGTGAGTGATGCACTAGATCCAGCTC 720
|||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 801 CTACTAGCTTTCTTGGATCGGTTCTTCCCGACAGTGTGAGTGATGCACTAGATCCAGCTC 860
Query 721 ATCATCATGTGCTTCAAAACGCAGTTTCTTCCGGGATTAGAAGTTATGCAGTGGTTAGGA 780
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 861 ATCATCATGTGCTTCAAAACGCAGTTTCTTCCGGGATTAGAAGTTATGCCGTGGTTAGGA 920
Query 781 AGATAGACAAACTTGAAGGAACATCATCTCCATCTCAGTTTACATCTCTTAGAGCAACGG 840
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 921 AGATAGACAAACTTGAAGGAACATCATCTCCATCTCATTTTACATCTCTTAGAGCAACGG 980
Query 841 TATCGGTGATTACTTATAACGGGTATTTCCAGGAGTATACGCTAAGTATCAATAACAAGA 900
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 981 TATCGGTGATCACTTATAACGGATATTTCCAGGAGTATACGCTAAGTATCAATAACAAGA 1040
Query 901 ATGAGTCTTTATGGACAATGGAACGTGAATTCAACCTCTTCTCAATAACAACCGGGTGAT 960
|||||||| |||||||| |||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 1041 ATGAGTCTCTATGGACACTGGAACGTGAATTCAATCTCTTCTCCATAACCACCGGGTGAT 1100
Query 961 GTATAAAATCAAATACCAA 979
||||| || |||||| |||
Sbjct 1101 GTATACAACCAAATATCAA 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47923376238
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5