BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg944951 Length=1494 Score E Sequences producing significant alignments: (Bits) Value AT4G30400.1 | Symbols: | RING/U-box superfamily protein | chr4... 2154 0.0 > AT4G30400.1 | Symbols: | RING/U-box superfamily protein | chr4:14866946-14868628 FORWARD LENGTH=1683 Length=1683 Score = 2154 bits (1166), Expect = 0.0 Identities = 1396/1500 (93%), Gaps = 43/1500 (3%) Strand=Plus/Plus Query 1 TTCCTTTTCTCTCTCACACTTATGAAATTTTCTCGGGAAAATATGAAATGGGTTTTTCCA 60 |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 102 TTCCTTTTCTCTCTCAAACTCATGAAATTTTCTCGGGAAAATATGAAATGGGTTTTCCCA 161 Query 61 GAAATCAAAACAACTCAGAATTTCCTCTCTCCTTCATCACTTCCACGGCCACCACCACAA 120 |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 162 GAAATCAAAACAACTCAGAATTTCCTCTCTCCTTCATCACTT------------CCACAA 209 Query 121 GAACCACCGTTATCTCTCCGATCCAACAACGCAAACTTCGATCTAAACAGCAAAATCAGT 180 |||||||||||||||||||| | | || ||||||||||||||||||||||||||||||| Sbjct 210 GAACCACCGTTATCTCTCCGCT-C--CAGCGCAAACTTCGATCTAAACAGCAAAATCAGT 266 Query 181 CCGAGTAttcttctcataatcataatcctctcaatcatcttcttcatctctggtcttctt 240 || |||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 267 CCAAGTATTCTCCTCATAATCATAATCCTCTCAATCATCTTCTTCATCTCCGGTCTCCTT 326 Query 241 catctcttAGTCAGATTCCTTCTCACACCATCAAGCAGAGACAGAGAAGATTACTTCGAC 300 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 327 CATCTCTTAGTCAGATTCCTCCTCACACCATCGAGCAGAGACAGAGAAGATTACTTCGAC 386 Query 301 AACGTCACTGCTCTTCAAGGCCAGCTTCAACAGCTTTTTCATCTCCATGATTCTGGAGTT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 387 AACGTCACTGCTCTTCAAGGCCAGCTTCAACAGCTTTTTCATCTCCATGATTCTGGAGTT 446 Query 361 GACCAATCCTTCATCGACACGTTACCTGTTTTCCATTACAAGTCCATAATCGGTCTCAAG 420 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 447 GACCAATCCTTCATCGACACGTTACCTGTTTTCCATTACAAATCCATAATCGGTCTCAAG 506 Query 421 AACTATCCTTTTGATTGTGCTGTTTGTCTTTGTGAGTTCGAAACAGAGGACAAGCTCAGG 480 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 507 AACTATCCTTTTGATTGTGCAGTTTGTCTTTGTGAGTTCGAAACAGAGGATAAGCTCAGG 566 Query 481 CTTTTACCTAAATGCAGCCACGCCTTTCACATGGATTGTATCGATACTTGGCTtctctct 540 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 567 CTCTTACCTAAATGCAGCCACGCCTTTCACATGGATTGTATCGATACTTGGCTTCTATCT 626 Query 541 cactcaacttgtcctttgtgtagatctagtctcctctctgatctctcttctcACCAAGAT 600 ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 627 CACTCTACTTGTCCTTTGTGTAGATCCAGTCTCCTCTCTGATCTCTCTTCGCACCAAGAT 686 Query 601 CCTCGTTCTTCTTTCCTCCTTGTTCTTGAGTCTGCGAGTGATCATAGCTCCAGAGAGATT 660 ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||| Sbjct 687 CCTCGTTCTTCTTTCCTCCTTGTGCTCGAGTCTGCGAGTGATCATAGCTCGAGAGAGATT 746 Query 661 GGAGGAGATAGAGACAGTGCAGCTTGTGTGGCTGCCAATGATGATAATGATGTGTCTAAT 720 ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| | Sbjct 747 GGAGGAGATAGAGACAGTGCAGCTTGTGTGGCTGCAAATGATGATATTGATGTGTCT-A- 804 Query 721 GTTCATTCACATTCCAATTCTCATCTTGGTTTTGTCGGAAACAATGATCTTGGATCACAC 780 | | ||||||||||||| |||||||||||||||||||||||| || Sbjct 805 G----------------TGCTCATCTTGGTTTGGTCGGAAACAATGATCTTGGATCA-AC 847 Query 781 C-GGTTAGATTCGGGTCATGGAGATCAATACCCT-GATGGTGAATTGGGTGGTTCGGTTG 838 | || ||||||||||||| |||||||| || ||| ||||||||||||||||||||||||| Sbjct 848 CAGGATAGATTCGGGTCACGGAGATCAGTA-CCTGGATGGTGAATTGGGTGGTTCGGTTG 906 Query 839 GAAAGGTTGTTCCTTTTGCAGTTAAGCTTGGGAAATTTAGGAATATAGATATTGGTGAAG 898 ||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||| Sbjct 907 GAAAGGTTGTTCCTTTTTCAGTTAAGCTAGGGAAGTTTAGGAATATAGATATTGGTGAAG 966 Query 899 GAACTAGTAGCAACAACAACATTGGTAATAGTAGTAGTTTAGATGAAAGGAGGTGTTTTT 958 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 967 GAACTAGTAGCAACAACAACATTGGTAATAGTAGTAGTTTAGATGAGAGGAGGTGTTTCT 1026 Query 959 CAATGGGATCATATGAGTATATAATGGATGAAGAAACGGCTCTTAAAGTTCATGTTTCAA 1018 |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 1027 CAATGGGATCATATGAGTATATAATGGATGAAGAAACGACTCTTAAGGTTCATGTTTCAA 1086 Query 1019 CTAAGAAACAATCAAGCAAGAACCGTGGCTTGCCCGGTCATAGGACCGCCATGTCCGAAT 1078 | |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 1087 CCAAGAAACAATCAAGCAAGAACCGTGGCTTGCCCGGTCATAGGACAGCGATGTCCGAAT 1146 Query 1079 GCGGGTTTGATCCAACAGGGAGATTGAAATTCAATGGGAGCGGATCGATGAGGATCGCGG 1138 ||||||||||||||||||||||||||||||||| |||||| |||||||||||||| | || Sbjct 1147 GCGGGTTTGATCCAACAGGGAGATTGAAATTCAGTGGGAGTGGATCGATGAGGATAGTGG 1206 Query 1139 AAGAAGCGACCGAGAAGAATGTAGTAGAAAGAGAGAGCTTTTCGGTATCTAAAATTTGGC 1198 |||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| |||| Sbjct 1207 AAGAAGCGGCCGAGAAGAATGTAGTGGAAAGAGAGAGCTTTTCGGTATCGAAAATATGGC 1266 Query 1199 TAAGAGGGAAGAAGGAGAAGCATAGTAAAGTTCAAGGAAAAGAGGATAGTTCATTGGTTT 1258 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1267 TAAGGGGGAAGAAGGAGAAGCATAGTAAAGTTCAAGGAAAAGAGGATAGTTCATTGGTTT 1326 Query 1259 CGTCTTCTTCGGGAAGAGCATTCTCTTTCAGGTTATCGAACCAGCGTAATCC-TCCCGAT 1317 | || ||||||||||||||||||||||||||||||||||||||||| || || ||||||| Sbjct 1327 CTTCGTCTTCGGGAAGAGCATTCTCTTTCAGGTTATCGAACCAGCGGAA-CCATCCCGAT 1385 Query 1318 ACGAAGAAT-GAGAGTGGTTGCGAAGAAGAGAATCAAAAGTGCGAAAACTCAGAATCGTT 1376 ||| || | || ||||||||||||||||| |||||||||||||||||||| || || || Sbjct 1386 GCGATGA-TCGAAAGTGGTTGCGAAGAAGATAATCAAAAGTGCGAAAACTCGGAGTCTTT 1444 Query 1377 GGAGACTAAAACACCATCTTTTGCTAGGAGGACTATGCTTTGGCTTGCTGGGAGACAAAA 1436 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1445 GGAGACTAAAACACCATCTTTTGCTAGGAGGACTATGCTTTGGCTTGCAGGGAGACAAAA 1504 Query 1437 CAAGGTTGTTCATTCTTCTTCTTCAACTAATGTCTAGTTTCTCTA-TTTTTCC-TTTTCA 1494 ||||||||||||||||||||||||||||||||||||||| || || ||||||| |||||| Sbjct 1505 CAAGGTTGTTCATTCTTCTTCTTCAACTAATGTCTAGTTACTATAATTTTTCCATTTTCA 1564 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73694400060 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5