BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944951
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30400.1 | Symbols: | RING/U-box superfamily protein | chr4... 2154 0.0
> AT4G30400.1 | Symbols: | RING/U-box superfamily protein | chr4:14866946-14868628
FORWARD LENGTH=1683
Length=1683
Score = 2154 bits (1166), Expect = 0.0
Identities = 1396/1500 (93%), Gaps = 43/1500 (3%)
Strand=Plus/Plus
Query 1 TTCCTTTTCTCTCTCACACTTATGAAATTTTCTCGGGAAAATATGAAATGGGTTTTTCCA 60
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 102 TTCCTTTTCTCTCTCAAACTCATGAAATTTTCTCGGGAAAATATGAAATGGGTTTTCCCA 161
Query 61 GAAATCAAAACAACTCAGAATTTCCTCTCTCCTTCATCACTTCCACGGCCACCACCACAA 120
|||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 162 GAAATCAAAACAACTCAGAATTTCCTCTCTCCTTCATCACTT------------CCACAA 209
Query 121 GAACCACCGTTATCTCTCCGATCCAACAACGCAAACTTCGATCTAAACAGCAAAATCAGT 180
|||||||||||||||||||| | | || |||||||||||||||||||||||||||||||
Sbjct 210 GAACCACCGTTATCTCTCCGCT-C--CAGCGCAAACTTCGATCTAAACAGCAAAATCAGT 266
Query 181 CCGAGTAttcttctcataatcataatcctctcaatcatcttcttcatctctggtcttctt 240
|| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 267 CCAAGTATTCTCCTCATAATCATAATCCTCTCAATCATCTTCTTCATCTCCGGTCTCCTT 326
Query 241 catctcttAGTCAGATTCCTTCTCACACCATCAAGCAGAGACAGAGAAGATTACTTCGAC 300
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 327 CATCTCTTAGTCAGATTCCTCCTCACACCATCGAGCAGAGACAGAGAAGATTACTTCGAC 386
Query 301 AACGTCACTGCTCTTCAAGGCCAGCTTCAACAGCTTTTTCATCTCCATGATTCTGGAGTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 AACGTCACTGCTCTTCAAGGCCAGCTTCAACAGCTTTTTCATCTCCATGATTCTGGAGTT 446
Query 361 GACCAATCCTTCATCGACACGTTACCTGTTTTCCATTACAAGTCCATAATCGGTCTCAAG 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 447 GACCAATCCTTCATCGACACGTTACCTGTTTTCCATTACAAATCCATAATCGGTCTCAAG 506
Query 421 AACTATCCTTTTGATTGTGCTGTTTGTCTTTGTGAGTTCGAAACAGAGGACAAGCTCAGG 480
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 507 AACTATCCTTTTGATTGTGCAGTTTGTCTTTGTGAGTTCGAAACAGAGGATAAGCTCAGG 566
Query 481 CTTTTACCTAAATGCAGCCACGCCTTTCACATGGATTGTATCGATACTTGGCTtctctct 540
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 567 CTCTTACCTAAATGCAGCCACGCCTTTCACATGGATTGTATCGATACTTGGCTTCTATCT 626
Query 541 cactcaacttgtcctttgtgtagatctagtctcctctctgatctctcttctcACCAAGAT 600
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 627 CACTCTACTTGTCCTTTGTGTAGATCCAGTCTCCTCTCTGATCTCTCTTCGCACCAAGAT 686
Query 601 CCTCGTTCTTCTTTCCTCCTTGTTCTTGAGTCTGCGAGTGATCATAGCTCCAGAGAGATT 660
||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 687 CCTCGTTCTTCTTTCCTCCTTGTGCTCGAGTCTGCGAGTGATCATAGCTCGAGAGAGATT 746
Query 661 GGAGGAGATAGAGACAGTGCAGCTTGTGTGGCTGCCAATGATGATAATGATGTGTCTAAT 720
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
Sbjct 747 GGAGGAGATAGAGACAGTGCAGCTTGTGTGGCTGCAAATGATGATATTGATGTGTCT-A- 804
Query 721 GTTCATTCACATTCCAATTCTCATCTTGGTTTTGTCGGAAACAATGATCTTGGATCACAC 780
| | ||||||||||||| |||||||||||||||||||||||| ||
Sbjct 805 G----------------TGCTCATCTTGGTTTGGTCGGAAACAATGATCTTGGATCA-AC 847
Query 781 C-GGTTAGATTCGGGTCATGGAGATCAATACCCT-GATGGTGAATTGGGTGGTTCGGTTG 838
| || ||||||||||||| |||||||| || ||| |||||||||||||||||||||||||
Sbjct 848 CAGGATAGATTCGGGTCACGGAGATCAGTA-CCTGGATGGTGAATTGGGTGGTTCGGTTG 906
Query 839 GAAAGGTTGTTCCTTTTGCAGTTAAGCTTGGGAAATTTAGGAATATAGATATTGGTGAAG 898
||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||
Sbjct 907 GAAAGGTTGTTCCTTTTTCAGTTAAGCTAGGGAAGTTTAGGAATATAGATATTGGTGAAG 966
Query 899 GAACTAGTAGCAACAACAACATTGGTAATAGTAGTAGTTTAGATGAAAGGAGGTGTTTTT 958
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 967 GAACTAGTAGCAACAACAACATTGGTAATAGTAGTAGTTTAGATGAGAGGAGGTGTTTCT 1026
Query 959 CAATGGGATCATATGAGTATATAATGGATGAAGAAACGGCTCTTAAAGTTCATGTTTCAA 1018
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1027 CAATGGGATCATATGAGTATATAATGGATGAAGAAACGACTCTTAAGGTTCATGTTTCAA 1086
Query 1019 CTAAGAAACAATCAAGCAAGAACCGTGGCTTGCCCGGTCATAGGACCGCCATGTCCGAAT 1078
| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1087 CCAAGAAACAATCAAGCAAGAACCGTGGCTTGCCCGGTCATAGGACAGCGATGTCCGAAT 1146
Query 1079 GCGGGTTTGATCCAACAGGGAGATTGAAATTCAATGGGAGCGGATCGATGAGGATCGCGG 1138
||||||||||||||||||||||||||||||||| |||||| |||||||||||||| | ||
Sbjct 1147 GCGGGTTTGATCCAACAGGGAGATTGAAATTCAGTGGGAGTGGATCGATGAGGATAGTGG 1206
Query 1139 AAGAAGCGACCGAGAAGAATGTAGTAGAAAGAGAGAGCTTTTCGGTATCTAAAATTTGGC 1198
|||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 1207 AAGAAGCGGCCGAGAAGAATGTAGTGGAAAGAGAGAGCTTTTCGGTATCGAAAATATGGC 1266
Query 1199 TAAGAGGGAAGAAGGAGAAGCATAGTAAAGTTCAAGGAAAAGAGGATAGTTCATTGGTTT 1258
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 TAAGGGGGAAGAAGGAGAAGCATAGTAAAGTTCAAGGAAAAGAGGATAGTTCATTGGTTT 1326
Query 1259 CGTCTTCTTCGGGAAGAGCATTCTCTTTCAGGTTATCGAACCAGCGTAATCC-TCCCGAT 1317
| || ||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 1327 CTTCGTCTTCGGGAAGAGCATTCTCTTTCAGGTTATCGAACCAGCGGAA-CCATCCCGAT 1385
Query 1318 ACGAAGAAT-GAGAGTGGTTGCGAAGAAGAGAATCAAAAGTGCGAAAACTCAGAATCGTT 1376
||| || | || ||||||||||||||||| |||||||||||||||||||| || || ||
Sbjct 1386 GCGATGA-TCGAAAGTGGTTGCGAAGAAGATAATCAAAAGTGCGAAAACTCGGAGTCTTT 1444
Query 1377 GGAGACTAAAACACCATCTTTTGCTAGGAGGACTATGCTTTGGCTTGCTGGGAGACAAAA 1436
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1445 GGAGACTAAAACACCATCTTTTGCTAGGAGGACTATGCTTTGGCTTGCAGGGAGACAAAA 1504
Query 1437 CAAGGTTGTTCATTCTTCTTCTTCAACTAATGTCTAGTTTCTCTA-TTTTTCC-TTTTCA 1494
||||||||||||||||||||||||||||||||||||||| || || ||||||| ||||||
Sbjct 1505 CAAGGTTGTTCATTCTTCTTCTTCAACTAATGTCTAGTTACTATAATTTTTCCATTTTCA 1564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73694400060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5