BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944958

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G30330.1 | Symbols:  | Small nuclear ribonucleoprotein famil...   501    1e-141


> AT4G30330.1 | Symbols:  | Small nuclear ribonucleoprotein family 
protein | chr4:14836548-14838020 REVERSE LENGTH=593
Length=593

 Score =  501 bits (271),  Expect = 1e-141
 Identities = 296/308 (96%), Gaps = 1/308 (0%)
 Strand=Plus/Plus

Query  1    CACTTGCAACTTCA-GCAACCATGGCGAGCACTAAAGTTCAGAGGATTATGACTCAACCC  59
            |||||||||||||| ||||  ||||||||||| |||||||||||||||||||||||||||
Sbjct  81   CACTTGCAACTTCAGGCAATTATGGCGAGCACCAAAGTTCAGAGGATTATGACTCAACCC  140

Query  60   ATTAATCTGATTTTCAGGTTTCTTCAAAGTAAAGCTCGGATTCAGATTTGGCTTTTTGAG  119
            ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct  141  ATTAATCTGATTTTCAGATTTCTCCAAAGTAAAGCTCGGATTCAGATTTGGCTTTTTGAG  200

Query  120  CAGAAAGATTTGAGGATTGAGGGACGAATTACTGGTTTTGATGAGTACATGAATTTGGTG  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  201  CAGAAAGATTTGAGGATTGAGGGACGAATTACTGGTTTTGATGAGTACATGAATTTGGTG  260

Query  180  CTGGATGAGGCTGAGGAAGTGAGCATCAAGAAGAAAACCAGAAAACCACTTGGAAGGATT  239
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct  261  CTGGATGAGGCAGAGGAAGTGAGCATCAAGAAGAAAACCAGAAAACCACTTGGTCGGATT  320

Query  240  TTGCTCAAAGGAGACAACATAACTCTCATGATGAACGCGGGCAAGTGATGTCTGTTGCTG  299
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  321  TTGCTTAAAGGAGACAACATAACTCTCATGATGAACGCGGGCAAGTGATGTCTGTTGCAG  380

Query  300  TGGAAGGA  307
            || |||||
Sbjct  381  TGCAAGGA  388



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14225772967


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5