BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944969
Length=312
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30220.2 | Symbols: RUXF | small nuclear ribonucleoprotein F... 420 4e-117
AT2G14285.1 | Symbols: | Small nuclear ribonucleoprotein famil... 302 2e-81
> AT4G30220.2 | Symbols: RUXF | small nuclear ribonucleoprotein
F | chr4:14802960-14804358 REVERSE LENGTH=530
Length=530
Score = 420 bits (227), Expect = 4e-117
Identities = 247/257 (96%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 35 ATTCCGGTTAACCCGAAACCATTCTTGAACAACTTGACCGGCAAGACTGTTATCGTCAAG 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 ATTCCGGTTAACCCGAAACCATTCTTGAACAACTTGACCGGCAAGACTGTTATCGTCAAG 192
Query 95 CTTAAATGGGGAATGGAATACAAAGGTTTCCTTGCCTCTGTTGACTCCTACATGAACTTG 154
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 193 CTTAAATGGGGAATGGAATACAAAGGTTTTCTCGCCTCTGTTGACTCCTACATGAACTTG 252
Query 155 CAGCTGGGAAACACCGAGGAATACATCGATGGACAATTGACAGGGAACCTTGGAGAGATC 214
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 253 CAGCTGGGAAACACCGAAGAATATATTGATGGACAATTGACAGGGAACCTTGGAGAGATC 312
Query 215 TTGATCAGATGCAACAATGTCTTGTATGTCCGAGGTGTGCCAGAAGATGAAGAACTTGAA 274
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 313 TTGATCAGGTGCAACAATGTTTTGTATGTCCGTGGTGTGCCAGAAGATGAAGAGCTTGAA 372
Query 275 GATGCTGATCAAGACTA 291
|| ||||||||||||||
Sbjct 373 GACGCTGATCAAGACTA 389
> AT2G14285.1 | Symbols: | Small nuclear ribonucleoprotein family
protein | chr2:6052332-6053994 REVERSE LENGTH=580
Length=580
Score = 302 bits (163), Expect = 2e-81
Identities = 187/199 (94%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 93 AGCTTAAATGGGGAATGGAATACAAAGGTTTCCTTGCCTCTGTTGACTCCTACATGAACT 152
||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 101 AGCTTAAATGGGGAATGGAATACAAAGGTTTTCTCGCTTCTGTTGACTCCTACATGAACT 160
Query 153 TGCAGCTGGGAAACACCGAGGAATACATCGATGGACAATTGACAGGGAACCTTGGAGAGA 212
||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 161 TGCAGCTAGGAAACACCGAGGAATACATTGATGGGCAATTGACAGGAAACCTTGGAGAGA 220
Query 213 TCTTGATCAGATGCAACAATGTCTTGTATGTCCGAGGTGTGCCAGAAGATGAAGAACTTG 272
| ||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |
Sbjct 221 TTTTGATCAGATGCAACAACGTCTTGTATGTTCGTGGTGTGCCAGAAGATGAAGAACTCG 280
Query 273 AAGATGCTGATCAAGACTA 291
|||||||||||||||||||
Sbjct 281 AAGATGCTGATCAAGACTA 299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14477111712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5