BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944978

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G30180.1 | Symbols:  | sequence-specific DNA binding transcr...   800    0.0  


> AT4G30180.1 | Symbols:  | sequence-specific DNA binding transcription 
factors;transcription regulators | chr4:14768936-14769648 
FORWARD LENGTH=713
Length=713

 Score =  800 bits (433),  Expect = 0.0
 Identities = 492/519 (95%), Gaps = 10/519 (2%)
 Strand=Plus/Plus

Query  1    CAGCAAAAATAGTTTCTCATATGGAGAGGCAAATCATAAACAAGAAGAAAAGAGTATTTT  60
            |||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||
Sbjct  73   CAGCAAAAATAGTTTCTCATATGGAGAGGCAAATCATAAACAGGAAGAAACGAGTGTTTT  132

Query  61   CTCTTGAACCAAACAAGAACCCTAGTGCAGTTTTCACGAGAAAATACACAAGCCACTTGG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  133  CTCTTGAACCAAACAAGAACCCTAGTGCAGTTTTCACGAGAAAATACACAAGCCACTTGG  192

Query  121  TTCCTGCACTCAAGAAGCTCAACATGAACAAGAACTCTTCAAAACAAACCGTGAAGCATG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  193  TTCCTGCACTCAAGAAGCTCAACATGAACAAGAACTCTTCAAAACAAACCGTGAAGCATG  252

Query  181  AAGTAGACATGGCTTTGGCTTTGTCTGCTCAAGAATTTGCATGGAGCCGTTTCTTGCTAC  240
            ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  253  AAGTAGATATGGCTTTGGCTTTGTCTGCTCAAGAATTTGCATGGAGCCGTTTCTTGCTGC  312

Query  241  AGAAGCTATCGTCCTCGA-CGAATCCAACCACTACTACT--T-CTTCTTCCGATGGAATT  296
            |||||||||||||||| | |||||||||||||||| |||  | |||||||||||||||||
Sbjct  313  AGAAGCTATCGTCCTC-ATCGAATCCAACCACTACCACTAGTTCTTCTTCCGATGGAATT  371

Query  297  CAGATTCTCGAAAGATCCGATAAAGAAGGCCGAAACGAAGGAG-AG--ATAGAGGAGAAA  353
            | |||||| |||||| |||||||||||||| ||||||||| || ||  |||||||||| |
Sbjct  372  CGGATTCTTGAAAGACCCGATAAAGAAGGCGGAAACGAAGAAGGAGGGATAGAGGAGAGA  431

Query  354  CTGAGGGAATT-ACAGACGCTTTTGCCAGGTGGAGAAGAGATGAATGTGGAAGAAATGTT  412
            ||||||||||| | ||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct  432  CTGAGGGAATTGA-AGAAGCTTTTGCCAGGTGGGGAAGAGATGAATGTGGAAGAAATGTT  490

Query  413  GAGTGAGATTGGTAATTACATTAAATGTCTTGAGTTACAGACGATTGCTCTCAAGTCCAT  472
            ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct  491  GAGTGAGATTGGTAACTACATTAAATGTCTTGAGTTGCAGACGATTGCTCTCAAGTCCAT  550

Query  473  TGTTCAAGATAGTACTTGACTTTTAGTTTAAGTGTGTAA  511
            ||||||||||||||||||||||||||||||||||| |||
Sbjct  551  TGTTCAAGATAGTACTTGACTTTTAGTTTAAGTGTATAA  589



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24413795442


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5