BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944988
Length=2054
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30080.1 | Symbols: ARF16 | auxin response factor 16 | chr4:... 3260 0.0
> AT4G30080.1 | Symbols: ARF16 | auxin response factor 16 | chr4:14703201-14706336
REVERSE LENGTH=2360
Length=2360
Score = 3260 bits (1765), Expect = 0.0
Identities = 1958/2054 (95%), Gaps = 2/2054 (0%)
Strand=Plus/Plus
Query 1 CAAAAACGGTCACAAAAAAGTATGATAAATGTTATGAATCCAATGAAAGGTGGAACAGAG 60
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 160 CAAAAACGGTCACAAAAAA-TATGATAAATGTGATGAATCCAATGAAAGGTGGAACAGAG 218
Query 61 AAAGGTTTAGATCCTCAACTATGGCATGCATGTGCTGGTGGTATGGTTCGTATGCCTCCT 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 AAAGGTTTAGATCCTCAGCTATGGCATGCATGTGCTGGTGGTATGGTTCGTATGCCTCCT 278
Query 121 ATGAACTCTAAAGTCTTTTACTTTCCTCAAGGTCACGCCGAAAACGCTTACGATTGTGTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 ATGAACTCTAAAGTCTTTTACTTTCCTCAAGGTCACGCCGAAAACGCTTACGATTGTGTC 338
Query 181 GATTTCGGTAATCTTCCTATTCATCCCATGGTTTTGTGTCGTGTTTTAGCCATTAAGTAT 240
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 339 GATTTCGGTAATCTCCCTATTCCTCCCATGGTTTTGTGTCGTGTTTTAGCCATTAAGTAT 398
Query 241 ATGGCTGATGCTGAATCTGACGAGGTTTTCGCCAAACTGAGGTTGATTCCTTTGAAAGAT 300
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 399 ATGGCTGATGCTGAATCTGACGAGGTTTTCGCTAAACTGAGATTGATTCCTTTGAAAGAT 458
Query 301 GATGAGTATGTTGATCATGAGTATGGAGATGGCGAAGATAGTAATGGTTTCGAGAGTAAT 360
||||||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 459 GATGAGTATGTTGATCACGAGTATGGTGATGGTGAAGATAGTAACGGTTTCGAGAGTAAT 518
Query 361 AGTGAGAAAACGCCTTCGTTTGCTAAGACTCTGACTCAGTCTGATGCTAATAATGGTGGG 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 519 AGTGAGAAAACGCCTTCGTTTGCTAAGACTTTGACTCAGTCTGATGCTAATAACGGTGGG 578
Query 421 GGATTCTCTGTTCCTCGTTATTGCGCTGAGACGATTTTCCCGAGGTTGGATTATAATGCC 480
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 579 GGTTTCTCTGTTCCTCGTTATTGCGCTGAGACGATTTTCCCGAGGTTGGATTATAACGCC 638
Query 481 GAGCCACCGGTTCAGACGATTCTTGCTAAGGATGTTCATGGTGATGTTTGGAAGTTTAGA 540
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 639 GAGCCGCCGGTTCAGACCATTCTTGCTAAGGATGTTCATGGTGATGTTTGGAAGTTCAGA 698
Query 541 CATATTTATAGAGGGACACCTCGTCGTCATCTTCTCACGACCGGGTGGAGTAATTTCGTG 600
||||||||||||||||| ||||| ||||| ||||| || ||||| ||||||||||| ||
Sbjct 699 CATATTTATAGAGGGACGCCTCGGCGTCACCTTCTTACAACCGGATGGAGTAATTTTGTA 758
Query 601 AACCAGAAGAAGCTTGTGGCGGGAGATTCGATTGTCTTTATGAGAGCTGAGAATGGAGAT 660
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 759 AACCAGAAGAAGCTTGTGGCGGGAGATTCGATTGTCTTCATGAGAGCGGAGAATGGAGAT 818
Query 661 CTTTGTGTAGGTATTAGGAGGGCTAAGAGAGGAGGGATAGGTAATGGACCCGAATATTCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 CTTTGTGTAGGTATTAGGAGGGCTAAGAGAGGAGGGATAGGTAATGGACCCGAATATTCA 878
Query 721 GCGGGTTGGAATCCGATTGGAGGAAGCTGTGGATACTCTTCTCTGTTAAAGGAAGATGAA 780
||||||||||||||||| || ||||| || || |||||||||||||||| ||||||||||
Sbjct 879 GCGGGTTGGAATCCGATCGGTGGAAGTTGCGGCTACTCTTCTCTGTTAAGGGAAGATGAA 938
Query 781 AGCAATAGTTTGAGGAGAAGTAATTGTTCGCTTGCGGATAGGAAGGGAAAAGTGACGGCT 840
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 939 AGCAATAGTTTGAGGAGAAGTAATTGTTCCCTTGCGGATAGGAAGGGGAAAGTGACGGCT 998
Query 841 GAATCAGTTATAGAAGCCGCCGCTCTCGCTATCAGCGGAAGACCGTTTGAGGTTGTGTAC 900
||||| ||||||||||| ||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 999 GAATCTGTTATAGAAGCAGCCACTCTTGCTATTAGCGGAAGACCGTTTGAGGTTGTGTAC 1058
Query 901 TATCCGAGGGCTAGCACTTCGGAGTTTTGTGTCAAGGCAGTAGATGCTCGAGCTGCGATG 960
|||||||| ||||||||||| |||||||||||||||||| |||||||||||||||| |||
Sbjct 1059 TATCCGAGAGCTAGCACTTCAGAGTTTTGTGTCAAGGCATTAGATGCTCGAGCTGCCATG 1118
Query 961 CGGATTCCGTGGTGCTCTGGTATGAGGTTTAAAATGGCTTTTGAGACAGAAGATTCGTCT 1020
||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1119 CGGATTCCGTGGTGCTCAGGTATGAGGTTTAAGATGGCTTTTGAGACAGAGGATTCGTCT 1178
Query 1021 CGGATAAGCTGGTTTATGGGGACTGTTTCAGCTGTTAATGTCTCTGATCCTATCCGTTGG 1080
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 CGGATAAGTTGGTTTATGGGGACTGTTTCAGCTGTTAATGTCTCTGATCCTATCCGTTGG 1238
Query 1081 CCTAATTCTCCTTGGCGGCTTCTACAGGTGGCCTGGGATGAGCCAGATTTACTCCAAAAC 1140
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1239 CCTAACTCTCCTTGGCGGCTTCTACAGGTGGCGTGGGATGAGCCAGATTTACTCCAAAAC 1298
Query 1141 GTGAAGCGGGTTAACCCGTGGTTGGTCGAATTGGTATCTAACGTACATCCGATCCCGCTT 1200
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1299 GTGAAGCGAGTTAACCCGTGGTTGGTGGAATTGGTATCAAACGTACATCCGATCCCGCTT 1358
Query 1201 ACTTCGTTTTCGCCCCCGAGGAAAAAGATGCGGCTACCTCAGCATCCGGATTACAACAAT 1260
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1359 ACTTCGTTTTCGCCACCGAGGAAAAAGATGCGGCTACCTCAGCATCCAGATTACAACAAT 1418
Query 1261 CTGCTCAATTCGATCCCAGTACCTTCATTCCCAAGCAATCCCCTCATCAGATCAAGCCCG 1320
||| |||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1419 CTGATCAATTCGATTCCAGTACCTTCATTCCCAAGCAATCCCCTTATTAGATCAAGCCCG 1478
Query 1321 TTAAGCTCTGTTCTGGACAATGTTCCCGTGGGTTTACAGGGAGCCAGGCATAATGCTCAT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479 TTAAGCTCTGTTCTGGACAATGTTCCCGTGGGTTTACAGGGAGCCAGGCATAATGCTCAT 1538
Query 1381 CAGTACTACGGGTTATCATCTTCGGATCTCCACCATTACTACTTGAATAGAcctcctcct 1440
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1539 CAGTACTACGGGTTATCATCTTCGGATCTTCACCATTACTACTTGAATAGACCACCTCCT 1598
Query 1441 cctcctcctccatcatctctcccacgttctcctcctctcggtctccGAAACATCGATACC 1500
|||||||||||||| ||||||| || ||||||| ||||||||||||||||||||||||||
Sbjct 1599 CCTCCTCCTCCATCCTCTCTCCAACTTTCTCCTTCTCTCGGTCTCCGAAACATCGATACC 1658
Query 1501 aaaaacgaaaaaaGATTTTGCTTTTTGACAATGGGAACAACACCATGCAATGATACTGAG 1560
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1659 AAAAACGAAAAAGGATTTTGCTTTTTGACAATGGGAACAACACCATGCAATGATACCAAA 1718
Query 1561 TCTAAAAAGTCCCACATTGTATTGTTCGGCAAGCTTATACTACCCGAGGAACAGCTATCA 1620
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1719 TCTAAAAAGTCCCATATTGTATTGTTCGGCAAGCTTATACTACCCGAGGAACAGCTATCA 1778
Query 1621 GAAAAAGGGTCAACGGATACCGCAAACATAGAGAAAACGCAGATTTCATCAGGGGGGTCA 1680
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1779 GAAAAAGGCTCAACGGATACCGCAAACATAGAGAAAACGCAGATTTCATCAGGCGGGTCG 1838
Query 1681 AACCAGAACGGTGTTGCAGGAAGGGAATTATCTTCGTCAGACGAAGGATCACCTTGCTCC 1740
||||| ||||| ||||| |||||||| || ||||||||||| |||||||||||||||||
Sbjct 1839 AACCAAAACGGCGTTGCGGGAAGGGAGTTTTCTTCGTCAGATGAAGGATCACCTTGCTCT 1898
Query 1741 AACAAAGTTCATGATGCATCAGGTTTGGAAACAGGGCATTGTAAAGTGTTTATGGAGTCA 1800
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1899 AAGAAAGTTCATGATGCATCAGGTTTGGAAACAGGGCATTGTAAAGTGTTTATGGAGTCA 1958
Query 1801 GATGATGTGGGTCGAACCTTAGACCTATCGGTTCTTGGTTCTTACGATGAATTGAGTCGA 1860
|| ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1959 GACGATGTAGGTCGAACCTTAGACCTATCGGTTCTTGGTTCATACGAAGAATTGAGTCGG 2018
Query 1861 AAACTCTCTGACATGTTTGGAATCAAAAATTCTGAGATGTTGAGCTCTGTTCTCTATAGG 1920
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 2019 AAACTCTCTGACATGTTTGGAATCAAAAAGTCTGAGATGTTAAGCTCTGTTCTCTATAGG 2078
Query 1921 GATGCATCAGGAGCCATCAAATACGCAGGAAACGAACCTTTCAGTGAGTTCTTGAAGACA 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2079 GATGCATCAGGAGCCATCAAATACGCAGGAAACGAACCTTTCAGTGAGTTCTTGAAGACA 2138
Query 1981 GCTCGGAGATTGACGATTCTGACGGAACAAGGCAGCGAGAGCGTTGTAATATAAATTTGG 2040
||||| |||||||| ||||||||||||||||| || |||||||||||| ||||| || ||
Sbjct 2139 GCTCGAAGATTGACAATTCTGACGGAACAAGGAAGTGAGAGCGTTGTAGTATAACTT-GG 2197
Query 2041 CAGAGTGTTTTGTT 2054
||||||||||||||
Sbjct 2198 CAGAGTGTTTTGTT 2211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101806705260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5