BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944991

Length=205
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G30067.1 | Symbols: LCR63 | low-molecular-weight cysteine-ri...   276    6e-74


> AT4G30067.1 | Symbols: LCR63 | low-molecular-weight cysteine-rich 
63 | chr4:14696074-14696478 FORWARD LENGTH=237
Length=237

 Score =  276 bits (149),  Expect = 6e-74
 Identities = 169/179 (94%), Gaps = 0/179 (0%)
 Strand=Plus/Plus

Query  7    TAGTTGAGCCAAATATGGGATGCATTCAAATTATTGGCAAATGCATTAAGATTCCAGACT  66
            ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct  59   TAGTTGAGCCAAATATGGGGTGCATTCAAATTATTGGCAGATGCATTAAGATTCCAGACT  118

Query  67   GTAGTGCGTCATGCAGGAAATTCCTTGGGCCACAGGCAAGTGGCTTCTGTGACAACGATG  126
            | ||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct  119  GCAGTGCGTCATGTAGGAAATTCCTTGGGCCACATGCAAGTGGCTACTGTGACAACGATG  178

Query  127  GTGCTGGTGGAACATGTATTTGTACTTACCCATGTCCGACTAAGGAAACGCATATGTGA  185
            ||||||||||||||||||||||||||||||| |||| |||||||||||  |||||||||
Sbjct  179  GTGCTGGTGGAACATGTATTTGTACTTACCCCTGTCAGACTAAGGAAATACATATGTGA  237



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9154845882


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5