BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944997
Length=1358
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30040.1 | Symbols: | Eukaryotic aspartyl protease family p... 1917 0.0
> AT4G30040.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr4:14685602-14686885 FORWARD LENGTH=1284
Length=1284
Score = 1917 bits (1038), Expect = 0.0
Identities = 1202/1283 (94%), Gaps = 4/1283 (0%)
Strand=Plus/Plus
Query 21 ATGGCGATTTTCTTTACATCTCCCCTCTTCTTTTTCATCATCCTTTGTTTCTTTATCTCC 80
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1 ATGGCGATTTTCTTTACATCTCCCCTCTTCTTTCTCATCATCCTTTGTTTCTCTATCTCC 60
Query 81 GTATTTCACTTGTCAGCATCACCAACTCTTGTTCTCAATCTCGTTCACTCCAACCAAATA 140
|| ||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 61 GTGGTTCACTTGTCAGCATCACCAACTCTTGTTCTCAATCTCGTTCATTCCTACCACATA 120
Query 141 TATTCCCTACAATCACCACAAGTCTCTCATATCAAGGAAGCATCCGTTGAACGTCTAGAG 200
|| || | | || ||||||| |||| ||||||||||||||| || || ||||||||||||
Sbjct 121 TACTCTCGAAAACCACCACATGTCTATCATATCAAGGAAGCGTCGGTCGAACGTCTAGAG 180
Query 201 TACTTGAAAGCCAAGGCAACGGGAGATATCATCGCACACCTTTCCCCTAACGTCCCTATC 260
||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 181 TACTTGAAAGCCAAGACAACTGGAGATATCATTGCACACCTTTCCCCTAACGTCCCTATC 240
Query 261 ATCCCACAAGCTTTCTTAGTGAACATATCAATAGGTAGCCCACCAGTCACGCAACTTCTC 320
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 241 ATCCCACAAGCTTTCTTAGTGAACATATCAATAGGTAGCCCACCAATCACACAACTTCTC 300
Query 321 CACATGGACACGGCCAGTGATCTTCTATGGCTACAATGTCGTCCTTGCATCAATTGCTAT 380
|||||||||||||| ||||||||||||||| ||||||||| |||||| ||||||||||||
Sbjct 301 CACATGGACACGGCTAGTGATCTTCTATGGATACAATGTCTTCCTTGTATCAATTGCTAT 360
Query 381 GCTCAAAGTCTTCCTATCTTCGATCCTTCTAGATCTTATACTCATCGCAACGAATCTTGT 440
||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| | |||
Sbjct 361 GCTCAAAGTCTTCCTATTTTCGATCCTTCTCGATCTTATACTCACCGCAACGAAACATGT 420
Query 441 AGAACTTCTCAATACTCTATGCCTAGCTTAAGATTCAATGCAAAAACCAGATCTTGCGAG 500
||||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||||
Sbjct 421 AGAACATCTCAATACTCTATGCCTAGCTTAAAATTCAATGCAAACACAAGATCTTGCGAG 480
Query 501 TATTCCATGAGATACATGGATGGTACAGGGAGCAAAGGCATACTAGCTAAAGAAATGCTG 560
||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||| ||
Sbjct 481 TATTCCATGAGATACGTGGATGATACAGGGAGCAAAGGCATACTAGCTAGAGAAATGTTG 540
Query 561 ATGTTTAATACAATCTACGATGAGTCTTCATCAGCTGCTTTACATGATGTTGTTTTTGGT 620
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 541 CTGTTTAATACAATCTACGATGAGTCTTCGTCAGCTGCTTTACATGACGTTGTTTTTGGT 600
Query 621 TGTGGCCATGATAACTACGGTGAACCTCTAGTTGGAACCGGCATTCTCGGTTTAGGATAT 680
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 601 TGTGGCCATGATAACTACGGTGAGCCTCTAGTTGGAACCGGCATTCTCGGTTTAGGGTAT 660
Query 681 GGTGAATTCTCGTTGGTTCATAGATTTGGTACAAAA-TTCTCATACTGCTTTGGAAGCTT 739
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 661 GGTGAATTCTCGTTGGTTCATAGATTTGGTA-AAAAGTTCTCATACTGCTTTGGAAGCTT 719
Query 740 AGATGATCCTTCTTATCCTCATAACGTTTTAGTTTTGGGAGATGATGGTGCCAACATTTT 799
|||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 720 AGATGATCCTTCTTATCCACATAACGTCTTAGTCTTGGGAGATGATGGTGCCAACATTTT 779
Query 800 GGGAGATACCACACCGTTAGAGATTTACAATGGTTTTTATTACGTTACAATCGAAGCGAT 859
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 780 GGGAGATACCACACCGTTAGAGATCCACAATGGTTTTTATTACGTTACAATCGAAGCCAT 839
Query 860 CAGCGTGGATGGAATAATTCTCCCGATCGATCCATGGGTATTCAACCGTAATCACCAAAC 919
|||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||
Sbjct 840 AAGCGTGGATGGAATCATTCTCCCGATCGATCCACGTGTATTCAACCGTAATCACCAAAC 899
Query 920 TGGTTTAGGTGGTACAATAATCGACACAGGAAATTCATTAACAAGCCTAGTCGAAGAAGC 979
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 900 CGGTTTAGGCGGTACAATAATCGACACGGGAAATTCATTAACAAGCCTAGTCGAAGAAGC 959
Query 980 ATACAAGCCATTGAAGAACAAAATTGAAGATTATTTT-GAAGGAAGGTTTACGGCCGCGG 1038
||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| ||||
Sbjct 960 TTACAAGCCATTGAAGAACAGAATTGAAGAT-ATTTTTGAAGGAAGGTTTACGGCAGCGG 1018
Query 1039 ATGTGAATCAAGATGACATGTTTAAAGTGGAGTGCTACAATGGAAACTTAGAGCGAGATT 1098
|||||| ||||||||||||| ||||| |||||||||||||||||||||| ||||||||||
Sbjct 1019 ATGTGAGTCAAGATGACATGATTAAAATGGAGTGCTACAATGGAAACTTTGAGCGAGATT 1078
Query 1099 TGGTCGAGTCCGGATTTCCGATTGTAACGTTTCATTTCTCAGATGGAGCAGAGTTGTCAT 1158
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1079 TGGTCGAGTCTGGATTTCCGATTGTAACGTTTCATTTCTCAGAAGGAGCAGAGTTGTCAT 1138
Query 1159 TGGATGTGAAAAGTGTGTTCATGAAGCTTTCACCAAATGTTTTCTGCTTAGCCGTGACCC 1218
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1139 TGGATGTGAAGAGTTTGTTCATGAAGCTTTCACCAAATGTTTTCTGCTTAGCCGTGACTC 1198
Query 1219 CTGGTAATATGAACAGCATTGGTGCGACGGCTCAACAGAGCTATAACATAGGGTATGATC 1278
|||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1199 CTGGTAATTTGAACAGCATTGGTGCGACGGCTCAACAGAGTTATAACATAGGCTATGATC 1258
Query 1279 TTGAAGCAAAGAAGATCTCTTTT 1301
| ||||||| | || | ||||||
Sbjct 1259 TCGAAGCAATGGAGGTTTCTTTT 1281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66867125940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5