BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945003

Length=648
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G29970.1 | Symbols:  | F-box and associated interaction doma...   259    2e-68


> AT4G29970.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr4:14662765-14663917 REVERSE LENGTH=852
Length=852

 Score =  259 bits (140),  Expect = 2e-68
 Identities = 176/192 (92%), Gaps = 7/192 (4%)
 Strand=Plus/Plus

Query  173  ATCTCTAATAAGCTTCAATCTGAGATCTGAAGACTTCAATGTTATTAAGTTCCCTAAGGA  232
            |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  462  ATCTCTGATAAGCTTCAATCTGAGATCTGAAGAATTCAATGTTATTAAGTTCCCTAAGGA  521

Query  233  TGTCAAATATCTATGGTCTTGTTATCTGGTGAACTACAATGGAAAGATAGCTTTAACGAA  292
            ||||||| || |||||||| || |||||||||||||||||||||||||||||||||||| 
Sbjct  522  TGTCAAACATATATGGTCTAGTAATCTGGTGAACTACAATGGAAAGATAGCTTTAACGAG  581

Query  293  TGACTCTTGTAACGACGGTACACTTGACTTGTGGGTTATGAAGGATGC--C-AGTAAACA  349
            | ||||||||||||  | |||||||||||||||||||||||||||||   | ||||||||
Sbjct  582  TTACTCTTGTAACG--G-TACACTTGACTTGTGGGTTATGAAGGATGATGCTAGTAAACA  638

Query  350  AGAATGGT-CAA  360
            |||||||| |||
Sbjct  639  AGAATGGTTCAA  650


 Score =  195 bits (105),  Expect = 6e-49
 Identities = 183/218 (84%), Gaps = 15/218 (7%)
 Strand=Plus/Plus

Query  415  GGTTCAAGGGTACATTTAGTACCGGGGAGCTTATATTTGCACCGTGCACT-TTCCCTAAC  473
            ||||||||| |||| ||||||||||||||||||||||||||||||||  | || ||  | 
Sbjct  644  GGTTCAAGGATACACTTAGTACCGGGGAGCTTATATTTGCACCGTGCTTTATTACC-GAT  702

Query  474  CCGTAC--TTTGA-ATATTACGATCTCAAGGGAAAAAA-TGCCAGAAAACTTGTGATTGA  529
            |||| |  ||| |  | |||||||||||| |||||||| |||||||||| ||||||||||
Sbjct  703  CCGTTCTTTTTTATTTGTTACGATCTCAA-GGAAAAAAGTGCCAGAAAAGTTGTGATTGA  761

Query  530  AGGAATTGGAGATGACTTGGTTAGTTTCAAAGTCT-TTATGGATCATGTAGAGAGTCCTA  588
            |||| |||| |||||| |   | | || || |||| || |||||||||||||||||||||
Sbjct  762  AGGACTTGGGGATGAC-T--AT-G-TT-AATGTCTCTT-TGGATCATGTAGAGAGTCCTA  814

Query  589  TGTTTCTACCAAAGGTGTGTTTATCGGATAATGATTAG  626
            |||||||||||||||| |||||||| ||| |||| |||
Sbjct  815  TGTTTCTACCAAAGGTTTGTTTATCCGATGATGACTAG  852



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31295873581


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5