BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945006
Length=2388
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29940.1 | Symbols: PRHA | pathogenesis related homeodomain ... 3210 0.0
> AT4G29940.1 | Symbols: PRHA | pathogenesis related homeodomain
protein A | chr4:14648139-14653379 REVERSE LENGTH=2811
Length=2811
Score = 3210 bits (1738), Expect = 0.0
Identities = 2052/2196 (93%), Gaps = 51/2196 (2%)
Strand=Plus/Plus
Query 1 TCTCGGTGATC-GGGAATTCGATATGGAGGAGAGTGAAACAAAGGGGAGAATCAATCAAG 59
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 191 TCTCGGTGATCGGGGAATTCGATATGGAGGAGAGTGAAACAAAGGGGAGAATCAGTCAAG 250
Query 60 AAACTGAAAAGGCTTGTGTTTCAGTTGAGAGAATTGGGTCTACTTTACTCTCATCATTTG 119
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 AAACTGATAAGGCTTGTGTTTCAGTTGAGAGAATTGGGTCTACTTTACTCTCATCATTTG 310
Query 120 TGAAGAAAGGTAAAGAAGTACCAAATAAGAGAAACTT-TAAGCCGAATAAGCGTAAAA-C 177
|||||||||||||||||||| ||||||||||||| || ||||| ||||||||| |||| |
Sbjct 311 TGAAGAAAGGTAAAGAAGTATCAAATAAGAGAAA-TTCTAAGCAGAATAAGCG-AAAAGC 368
Query 178 GGAAGAAGATA-TCTGTTCGAAATCCAGAAACAAGAAGTATTCTCGAGGATGGGTTCGTT 236
||||||||| | ||||||||||||| |||| ||||||||| ||||| |||||||| ||||
Sbjct 369 GGAAGAAGA-ACTCTGTTCGAAATCAAGAACCAAGAAGTACTCTCGGGGATGGGTCCGTT 427
Query 237 GTGAGGAAATGGAGGAGGTGAGGGTTAAGAAAACAAGGAAGAGGAAAAGTAAGAGACAGC 296
|||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||
Sbjct 428 GTGAGGAAATGGAGGAGGAGAAGGTTAAGAAAACAAGAAAGAGGAAAAGTAAGAGACAGC 487
Query 297 AAAAGGATAATAAGGTTGAGGTAGATGATTCGCTAAGGTTGCAGAGGCGGACAAGGTATT 356
|||||||||||||||||||||| |||||||| |||||||||| ||| ||||||||||||
Sbjct 488 AAAAGGATAATAAGGTTGAGGTTGATGATTCTTTAAGGTTGCAAAGGAGGACAAGGTATT 547
Query 357 TGCTCATTAAGATGAAGATGCAGCAGAATCTTATCGATGCATACGCAACTGAAGGTTGGA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 TGCTCATTAAGATGAAGATGCAGCAGAATCTTATCGATGCATACGCAACTGAAGGTTGGA 607
Query 417 AAGGTCAGAGCCGGGAAAAGATAAGACCAGACAAGGAGCTTGAGAGAGCCCGGAAACAGA 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 608 AAGGTCAGAGCCGGGAAAAGATAAGACCAGACAAGGAGCTTGAGAGAGCCCGGAAAGAGA 667
Query 477 TCTTAAACTGCAAGCTTGGACTACGCGACGCCATTTGCCAGCTGGATCTGCTTAGTTCTG 536
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 668 TCTTAAACTGCAAGCTTGGACTACGCGACGCCATTCGCCAACTGGATCTGCTTAGTTCTG 727
Query 537 TGGGAAGCATGGAAGAGAAAGTGATAGCTCCAGATGGATCTATTCATCATGACCATATAT 596
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 728 TGGGAAGCATGGAAGAGAAAGTGATAGCTTCAGATGGATCTATTCATCATGATCATATAT 787
Query 597 TTTGTGCGGTATGTAATTCTCGAGAAGCTTTTCCAGACAATGATATAATACTTTGTGATG 656
||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 TTTGTGCAGAATGCAATTCTCGAGAAGCTTTTCCAGACAATGATATAATACTTTGTGATG 847
Query 657 GAACGTGTAATCGAGCATTTCACCAGAAGTGCCTTGACCCTCCTTTGGAAACAGAAAGCA 716
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 848 GAACGTGTAATCGAGCATTTCACCAGAAATGCCTTGACCCTCCTTTGGAAACAGAAAGCA 907
Query 717 TACCTCCCGGAGATCTGGGTTGGTTTTGCAAATTTTGTGATTGCAAAATGGAAATCATCG 776
||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 908 TACCTCCCGGAGATCAGGGCTGGTTTTGCAAATTTTGTGATTGCAAAATTGAAATTATCG 967
Query 777 ACACAATGAATGCGCAAATTGGTACCCATTTCCCTGTGGACAGCAACTGGCAGGATATCT 836
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 968 ACACAATGAATGCACAAATTGGAACTCATTTCCCTGTGGACAGCAACTGGCAGGATATCT 1027
Query 837 TCAATGAAGAAGCTAGTCTTCCTATTGGATCTGAAGCTACACTTAACAATGAAGCAGATT 896
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1028 TCAATGAAGAAGCTAGTCTTCCTATTGGATCTGAAGCTACAGTTAACAATGAAGCAGATT 1087
Query 897 GGCCTTCGGATGACTCCAAGGATGATGATTATGACCCTGAAATGAGGGAAACCGGTGGAG 956
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1088 GGCCTTCGGATGACTCCAAGGATGATGATTATGACCCTGAAATGAGGGAAAACGGTGGAG 1147
Query 957 GAAATAGCAGCAACGTTAgtggtgatggtggtggtgataatgatggtggtggtgataatg 1016
|||| ||||||||||||||||||||||||||||||||||| || || |
Sbjct 1148 GAAACAGCAGCAACGTTAGTGGTGATGGTGGTGGTGATAACGA---------TG---A-- 1193
Query 1017 atggtgaAAGCATTTCAACCAGTTTGAGCTTATCTTCTGATGGTGTTGCCCTTTCAACGG 1076
| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 1194 A----GAAAGCATTTCAACTAGCTTGAGCTTATCATCTGATGGTGTTGCCCTTTCAACGG 1249
Query 1077 GATCATGGGAAGGCCATAGACTCAGCAATATGTTGGAACAATGTGAAACAAGTAATGAAG 1136
|||||||||||||||||||||||||||||||| |||| || || ||||||||||||||||
Sbjct 1250 GATCATGGGAAGGCCATAGACTCAGCAATATGGTGGAGCAGTGCGAAACAAGTAATGAAG 1309
Query 1137 AAACTGTATGTGGGCCAAGACAGCGAAGGACTGTTGACTATACAAAGTTGTACTATGAAA 1196
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1310 AAACTGTATGTGGGCCAAGACAGCGAAGGACTGTTGACTATACACAGTTGTACTATGAAA 1369
Query 1197 TGTTTGGAAAGGATGCAGTTTTGCAAGAACAAGGTAGTGAAGATGAAGACTGGGGTCCGA 1256
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1370 TGTTTGGAAAGGATGCAGTTTTGCAAGAGCAAGGTAGTGAAGATGAAGACTGGGGTCCGA 1429
Query 1257 ATGACAGAAGGAAGAGAAAAAGGGAATCTGATGCAGGAAGCACACTTGTAACTATGTGTG 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 ATGACAGAAGGAAGAGAAAAAGGGAATCTGATGCAGGAAGCACACTTGTAACTATGTGTG 1489
Query 1317 AAAGCAGTAAGAAAGATCAAGATGTTGTAGAAACACTGGAACAGAGTGAGAGAGATTCTG 1376
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1490 AAAGCAGTAAGAAAGATCAAGATGTTGTAGAAACGCTAGAACAGAGTGAGAGAGATTCTG 1549
Query 1377 TCTCTGTGGAAAATAAAGGAGGTCGAAGGCCGATGTTCAGACTCCCAA-AATATGCAGTT 1435
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 1550 TCTCTGTGGAAAATAAAGGAGGTCGAAGGCGGATGTTCAGACTCCCAAGAA-ATGCAGTT 1608
Query 1436 GAGAAGCTACGTCAAGTATTTGCAGAGACTGAGCTTCC-TACAAAAGCTGTGAGGGATCG 1494
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1609 GAGAAGCTACGTCAAGTATTTGCAGAGACTGAGCTTCCCT-CAAAAGCTGTGAGGGATCG 1667
Query 1495 TCTTTCAAAAGAGCTGAGTCTTGATCCAGAGAAGGTCAATAAATGGTTCAAAAATACACG 1554
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1668 TCTTGCAAAAGAGCTGAGTCTTGATCCAGAGAAGGTCAATAAATGGTTTAAAAATACTCG 1727
Query 1555 GTATATGGCACTGAGGAATAGGAAGACTGGGAGCGTGAAACAACCTGGGGATTCTAAGAC 1614
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1728 GTATATGGCACTGCGGAATAGGAAGACTGAGAGCGTGAAACAACCTGGGGATTCTAAGAC 1787
Query 1615 AGTCTCTGGAGGAGAATCTGGACCAGAAGCAGTCATGGAGAACAACACTGAAACTAATCA 1674
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1788 AGTCTCTGGAGGAGATTCTGGACCAGAAGCAGTCATGGAGAACAACACTGAAACAAATGA 1847
Query 1675 AGTTCAAGATACTTTGGATATGACA--GTTCCACCCGGATTTAATGATTCCGCTACAAAT 1732
||||||||||||||||||| |||| ||||||||||||||| || | |||||||||
Sbjct 1848 AGTTCAAGATACTTTGGAT--GACACTGTTCCACCCGGATTT---GA--C-GCTACAAAT 1899
Query 1733 CAGAAA-ATTCTCTCTCCC-TGTACTAACAACCAGGAGGAAATTCAACAGGCCAATGTCT 1790
|| ||| || ||||| ||| |||| |||||||||||||||| ||||||||| |||||||
Sbjct 1900 CA-AAACATACTCTC-CCCATGTAATAACAACCAGGAGGAATTTCAACAGGAAAATGTCT 1957
Query 1791 CCTTTCCTTCACCCACAGATGAAAGTCAACATTATCTGGAACAAAACGACTCTTCTTTCG 1850
| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1958 CTTTTCCTTCACCCACAGATGAAAGTCAACAGTATCTGGAACAAAACGATTCTTCTTTCG 2017
Query 1851 CTCTAGTGCCACATGAAGAGCTAAGCAGTGAAATGAGCTTAAAGACGGCCGTAGAGGAGA 1910
|||||||||||||||| ||| |||||| ||||| |||||||||||||| ||||||||||
Sbjct 2018 TTCTAGTGCCACATGAAAAGCAAAGCAGCGAAATTAGCTTAAAGACGGCTGTAGAGGAGA 2077
Query 1911 AGGAGACAGAGAGCAAGATGACGGAAGAGCCACATGAAGAGCTAAGCAGCGAAATGATCT 1970
| |||||||| |||||||||| | ||||||||||||||||||||||||| ||||||| |
Sbjct 2078 ATGAGACAGAAAGCAAGATGATGAAAGAGCCACATGAAGAGCTAAGCAGTGAAATGAGCC 2137
Query 1971 TAAAGACAGCGG-TAGAGGAGAAGGAGACAGAGAGCAAGATGATGGAAGTGCCACAGGAA 2029
||||||| || | | ||||||||||||||||||||||||||||| |||| |||||| |||
Sbjct 2138 TAAAGACGGCTGCT-GAGGAGAAGGAGACAGAGAGCAAGATGATAGAAGAGCCACATGAA 2196
Query 2030 GAGCTAAG-ATGTGAAACGAGCTTAAAGACAGCTGTAGAGGAGAAGGAGACAGAGAGCAA 2088
|||||||| | | |||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 2197 GAGCTAAGCA-GAGAAATGAGCTTAAAGACGGCTGTAGAGGAGAAGGAGACAGAGAGCAA 2255
Query 2089 GATGACGGAAGAGTCACATGAAGAGCTAAGCAACGAAATGAGCTTAAAG-ACAGCTGTAG 2147
||||| ||||||| ||||||| ||||||| || |||||||||||||| | ||||| ||||
Sbjct 2256 GATGATGGAAGAGCCACATGATGAGCTAAACAGCGAAATGAGCTTAA-GTACAGCGGTAG 2314
Query 2148 AGGAGAAGGAGAC-GGAGAGAAAGATGACGGAAGAG 2182
||||||||||||| || ||| |||||||||||||||
Sbjct 2315 AGGAGAAGGAGACAGG-GAGCAAGATGACGGAAGAG 2349
Score = 697 bits (377), Expect = 0.0
Identities = 479/525 (91%), Gaps = 20/525 (4%)
Strand=Plus/Plus
Query 1858 GCCACATGAAGAGCTAAGCAGTGAAATGAGCTTAAAGACGGCCG-TAGAGGAGAAGGAGA 1916
||||||||||||||||||||||||||||||| |||||||||| | | |||||||||||||
Sbjct 2106 GCCACATGAAGAGCTAAGCAGTGAAATGAGCCTAAAGACGGCTGCT-GAGGAGAAGGAGA 2164
Query 1917 CAGAGAGCAAGATGACGGAAGAGCCACATGAAGAGCTAAGCAGCGAAATGATCTTAAAGA 1976
||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 2165 CAGAGAGCAAGATGATAGAAGAGCCACATGAAGAGCTAAGCAGAGAAATGAGCTTAAAGA 2224
Query 1977 CAGCGGTAGAGGAGAAGGAGACAGAGAGCAAGATGATGGAAGTGCCACAGGAAGAGCT-A 2035
| || ||||||||||||||||||||||||||||||||||||| |||||| || ||||| |
Sbjct 2225 CGGCTGTAGAGGAGAAGGAGACAGAGAGCAAGATGATGGAAGAGCCACATGATGAGCTAA 2284
Query 2036 AGATGTGAAACGAGCTTAAAG-ACAGCTGTAGAGGAGAAGGAGACAGAGAGCAAGATGAC 2094
| | | |||| |||||| ||| ||||| ||||||||||||||||||| ||||||||||||
Sbjct 2285 ACA-GCGAAATGAGCTT-AAGTACAGCGGTAGAGGAGAAGGAGACAGGGAGCAAGATGAC 2342
Query 2095 GGAAGAGTCACATGAAGAGCTAAGCAACGAAATGAGCTTAAAGACAGCTGTAGAGGAGAA 2154
|||||||||||||||||||||||||||||||||||||||| || || ||| ||
Sbjct 2343 GGAAGAGTCACATGAAGAGCTAAGCAACGAAATGAGCTTA--GA-AG----AGA--AG-- 2391
Query 2155 GGAGACGGAGAGAAAGATGACGGAAGAGGAAGAATTTGAAGTAGTAATGGAGATGCTTTG 2214
| |||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 2392 G-AGACGGGGAGAAAGATGACGGAAGAGGAAGAATTGGAAGCAGTAATGGAGATGCTTTG 2450
Query 2215 TAGAACAGAAAACAAGTTACTTGACGTGACGCAGAGGCTTGAGAGATTTAAAACACCGAA 2274
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 2451 TAGAACAGAAAACAAGTTACTGGACGTGACGCAGAGGCTTGATAGATTTAAAACACCAAA 2510
Query 2275 AGGCCGGAAAAAGTTAGGCAAGTCTTCTTCTTCTTTAACT-GAAGAAGACTCAGTAGTGT 2333
|||||| |||||||||||||| ||||||||| ||||| || |||||||||||||||||||
Sbjct 2511 AGGCCGAAAAAAGTTAGGCAATTCTTCTTCTCCTTTA-CTTGAAGAAGACTCAGTAGTGT 2569
Query 2334 ATGTTCCAATAGCAGAGATCAAGGAGAAAAGGTAAAAATATATAT 2378
||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2570 ATGTTCCAATAGCAGAGATCAAGGAGAAAAGGTAACAATATATAT 2614
Score = 302 bits (163), Expect = 1e-80
Identities = 220/247 (89%), Gaps = 6/247 (2%)
Strand=Plus/Plus
Query 1939 GCCACATGAAGAGCTAAGCAGCGAAATGATCTTAAAGACAGCGGTAGAGGAGAAGGAGAC 1998
|||||||||| ||| |||||||||||| | ||||||||| || ||||||||||| |||||
Sbjct 2025 GCCACATGAAAAGCAAAGCAGCGAAATTAGCTTAAAGACGGCTGTAGAGGAGAATGAGAC 2084
Query 1999 AGAGAGCAAGATGATGGAAGTGCCACAGGAAGAGCTAAG-ATGTGAAACGAGCTTAAAGA 2057
||| |||||||||||| ||| |||||| ||||||||||| | |||||| |||| ||||||
Sbjct 2085 AGAAAGCAAGATGATGAAAGAGCCACATGAAGAGCTAAGCA-GTGAAATGAGCCTAAAGA 2143
Query 2058 CAGCTG-TAGAGGAGAAGGAGACAGAGAGCAAGATGACGGAAGAGTCACATGAAGAGCTA 2116
| |||| | |||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 2144 CGGCTGCT-GAGGAGAAGGAGACAGAGAGCAAGATGATAGAAGAGCCACATGAAGAGCTA 2202
Query 2117 AGCA-ACGAAATGAGCTTAAAGACAGCTGTAGAGGAGAAGGAGACGGAGAGAAAGATGAC 2175
|||| | ||||||||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 2203 AGCAGA-GAAATGAGCTTAAAGACGGCTGTAGAGGAGAAGGAGACAGAGAGCAAGATGAT 2261
Query 2176 GGAAGAG 2182
|||||||
Sbjct 2262 GGAAGAG 2268
Score = 268 bits (145), Expect = 1e-70
Identities = 214/245 (87%), Gaps = 14/245 (6%)
Strand=Plus/Plus
Query 1858 GCCACATGAAGAGCTAAGCAGTGAAATGAGCTTAAAGACGGCCGTAGAGGAGAAGGAGAC 1917
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 2187 GCCACATGAAGAGCTAAGCAGAGAAATGAGCTTAAAGACGGCTGTAGAGGAGAAGGAGAC 2246
Query 1918 AGAGAGCAAGATGACGGAAGAGCCACATGAAGAGCTAAGCAGCGAAATGATCTTAAAG-A 1976
|||||||||||||| ||||||||||||||| ||||||| ||||||||||| ||||| | |
Sbjct 2247 AGAGAGCAAGATGATGGAAGAGCCACATGATGAGCTAAACAGCGAAATGAGCTTAA-GTA 2305
Query 1977 CAGCGGTAGAGGAGAAGGAGACAGAGAGCAAGATGATGGAAGTGCCACAGGAAGAGCTAA 2036
|||||||||||||||||||||||| ||||||||||| ||||| | |||| ||||||||||
Sbjct 2306 CAGCGGTAGAGGAGAAGGAGACAGGGAGCAAGATGACGGAAGAGTCACATGAAGAGCTAA 2365
Query 2037 GATGTGAAACGAGCTTAAAGACAGCTGTAGAGGAGAAGGAGACAGAGAGCAAGATGACGG 2096
| || ||| || || ||| |||| ||||||||||| | ||| ||||||||||
Sbjct 2366 GC----AA-CGA----AATGA--GCT-TAGAAGAGAAGGAGACGGGGAGAAAGATGACGG 2413
Query 2097 AAGAG 2101
|||||
Sbjct 2414 AAGAG 2418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118573687290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5