BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945018
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29830.1 | Symbols: VIP3 | Transducin/WD40 repeat-like super... 1628 0.0
> AT4G29830.1 | Symbols: VIP3 | Transducin/WD40 repeat-like superfamily
protein | chr4:14597661-14599300 FORWARD LENGTH=1176
Length=1176
Score = 1628 bits (881), Expect = 0.0
Identities = 959/998 (96%), Gaps = 0/998 (0%)
Strand=Plus/Plus
Query 4 AAAAACCTAAAAAGAGGATGAAACTCGCAGGTCTGAAATCGATCGAGAACGCTCACGAAG 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 51 AAAAACCTAAAAAGAGAATGAAACTCGCAGGTCTGAAATCGATCGAGAACGCTCACGAAG 110
Query 64 ATTCCGTTTGGGCGGCGACGTGGGTTCCAGCGACGGAAGATCGACCGGCGTTGCTTCTGA 123
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 111 ATTCCGTTTGGGCAGCGACGTGGGTTCCGGCGACGGAAGATCGACCGGCGTTGCTTCTGA 170
Query 124 CTGGATCTCTAGACGAGACGGTGAAGTTATGGCGACCGGACGAGCTGGATCTTGTGCGGA 183
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 CTGGATCTCTTGACGAGACGGTGAAGTTATGGCGACCGGACGAGCTGGATCTTGTGCGGA 230
Query 184 CTAATACTGGACACTCATTGGGAGTAGCAGCTTTGGCGGCGCATCCTTCTGGGATCATTG 243
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 231 CTAATACTGGACACTCTTTGGGAGTAGCAGCTTTGGCTGCGCATCCTTCTGGGATTATTG 290
Query 244 CAGCTTCTTCTTCGCTTGATAGCTTCGTCCGTGTGTTTGATGTTGATACTAATGCTACAA 303
|||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 291 CAGCATCTTCTTCGATTGATAGCTTTGTCCGTGTGTTTGATGTTGATACTAATGCTACGA 350
Query 304 TTGCTGTTTTGGAAGCTCCTCCTTCTGAGGTTTGGGGAATGCAGTTTGAGCCTAAGGGTA 363
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 351 TTGCTGTTTTGGAAGCTCCTCCTTCTGAGGTTTGGGGAATGCAATTTGAACCTAAGGGTA 410
Query 364 CAATCCTTGCTGTTGCAGGTGGAAGTAGTGCCTCAGTCAAGCTTTGGGACACTTCAAGCT 423
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 411 CGATCCTTGCTGTTGCAGGTGGAAGTAGTGCCTCAGTCAAGCTTTGGGACACTGCAAGCT 470
Query 424 GGAGATTAATCTCAACTCTATCAATCCCACGCCCAGAAGCACCAAAACCTTCTGAGAAAA 483
||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 471 GGAGATTAATCTCAACTCTATCAATCCCACGCCCAGATGCACCAAAACCTTCCGATAAAA 530
Query 484 CCAGCAGCAAGAAATTCGTTCTCTCAGTGGCTTGGTCTCCTAATGGGAAACGGCTTGCTT 543
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 531 CCAGCAGCAAGAAATTCGTTCTCTCGGTGGCTTGGTCTCCTAATGGGAAACGACTTGCTT 590
Query 544 GTGGTTCAATGGATGGCACGATCTGTGTCTTTGATGTTGACCGTTCAAAGCTTCTTCATC 603
|||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||| |
Sbjct 591 GTGGTTCAATGGATGGTACGATCTGTGTTTTTGATGTTGACCGCTCAAAGCTACTTCACC 650
Query 604 AGCTAGAAGGTCACAACATGCCTGTAAGGTCCCTTGTGTTCTCCCCTGTAGATCCGAGAA 663
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 651 AGCTAGAAGGTCACAATATGCCTGTAAGGTCCCTTGTGTTCTCCCCTGTAGACCCGAGAG 710
Query 664 TCCTCTTCTCCGGATCAGATGATGGGCATGTGAACATGCACGATGCAGAAGGGAAAACAC 723
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 711 TCCTCTTCTCTGGATCAGATGATGGGCATGTGAACATGCACGATGCAGAAGGGAAAACGC 770
Query 724 TGTTGGGGTCCATGTCGGGGCACACGAGCTGGGTGCTTAGCGTTGATGCTAGCCCAGACG 783
|||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 771 TGTTGGGGTCCATGTCAGGGCACACGAGTTGGGTGCTGAGCGTTGATGCTAGCCCAGACG 830
Query 784 GTGGAGCCATAGCAACTGGCTCAAGCGATAGAACTGTGAGGCTATGGGATCTTAAAATGA 843
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 GTGGAGCCATAGCAACCGGCTCAAGCGATAGAACTGTGAGGCTATGGGATCTTAAAATGA 890
Query 844 GAGCTGCGATTCAGACAATGAGCAACCACAATGACCAGGTTTGGTCTGTGGCGTTTAGAC 903
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 891 GAGCTGCGATTCAGACAATGAGCAACCACAATGACCAGGTTTGGTCTGTGGCCTTTAGAC 950
Query 904 CACCAGGTGGAACTGGTGTCCGGGCTGGTCGACTTGCTAGTGTCTCTGATGACAAGAGTG 963
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 CACCAGGTGGAACCGGTGTCCGGGCTGGTCGACTTGCTAGTGTCTCTGATGACAAGAGTG 1010
Query 964 TATCGCTCTACGATTACTCATGAACAATTTGttttttt 1001
|||||||||| |||||||||||||||||| | ||||||
Sbjct 1011 TATCGCTCTATGATTACTCATGAACAATTCGGTTTTTT 1048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49380166501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5