BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945034

Length=475
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G29735.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   470    7e-132


> AT4G29735.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant 
structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro 
DOMAIN/s: Uncharacterised protein family UPF0197 (InterPro:IPR007915); 
Has 190 Blast hits to 190 proteins in 72 species: 
Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 0; 
Plants - 48; Viruses - 0; Other Eukaryotes - 9 (source: NCBI 
BLink). | chr4:14562639-14564378 REVERSE LENGTH=721
Length=721

 Score =  470 bits (254),  Expect = 7e-132
 Identities = 314/341 (92%), Gaps = 12/341 (4%)
 Strand=Plus/Plus

Query  128  ATCTATGAAGCTACATCATCCAGGAAAAACCGAAGCCTCGGAAAGGAGCTCGCTACTTCA  187
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  270  ATCTATGAAGCTACATCATCCAGGAAAAACCGAAGCGTCGGAAAGGAGCTCGCTACTTCA  329

Query  188  GCAGTTGCATCTGTCTTCTTGGGTTTTGGATCCTTGTTTCTGCTTCTTGCTAGTGGTGTT  247
            |||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||
Sbjct  330  GCAGTTGCATCTGTCTTCTTGGGTTTTGGATCGTTGTTTTTGCTACTTGCTAGTGGTGTT  389

Query  248  TATGTTTGATCCTTCTTCCTCAAATACTAT-CCCAACTAGTTCAAAGACaaaaaaaGACA  306
            ||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||| |||
Sbjct  390  TATGTCTGATCCTTCTTCCTCAA-TACTATTCCCAACTAGTTCAAAGACAAAAAAA-ACA  447

Query  307  GATTTATCTTTGTTGAAGTGAAATCAGAGTTATGAATGTTA-GACTTTGAGAAGTAGCCT  365
            |||||||||||||| |||| ||||||||||||||||||||| ||||| ||||||||||||
Sbjct  448  GATTTATCTTTGTTCAAGTAAAATCAGAGTTATGAATGTTAAGACTT-GAGAAGTAGCCT  506

Query  366  TTAAACACCAAGTTGCAATTGAATTATCTTGTGCTTTTGAACGCTAAACCGAGTTT-G--  422
            |||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||| |  
Sbjct  507  TTAAACACCAAGTTACAATTAAATTATCTTCTTCTTTTGAACGCTAAACCGAGTTTTGGT  566

Query  423  ---AATTT-CACCTCCATTAGAACATTGTTTGCGTTGTTAA  459
               ||||| |||| || ||||||||  ||||||||||||||
Sbjct  567  TTCAATTTTCACCGCCTTTAGAACAGCGTTTGCGTTGTTAA  607


 Score =  219 bits (118),  Expect = 3e-56
 Identities = 126/130 (97%), Gaps = 0/130 (0%)
 Strand=Plus/Plus

Query  1    GAAGAAGAAGAAGAGCTTAGCAACAATGGCGGCAAAACCGATTGCGAGTCCGATTCCGGT  60
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  77   GAAGAAGAAGAAGAGCTTAGCAACAATGGCGGCGAAACCGATTGCGAGTCCGATTCCGGT  136

Query  61   GGCTCTGTATCCGACTTTGTCGGTGTTCACTCTTGCGATTGGCCTCGTCATTACCGCTAT  120
            ||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct  137  GGCGCTGTATCCGACTTTATCGGTGTTCACTCTTGCGATTGGTCTCGTCATTACCGCTAT  196

Query  121  CTTCTTCATC  130
            ||||||||||
Sbjct  197  CTTCTTCATC  206



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22605366150


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5