BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945051
Length=932
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29640.1 | Symbols: | Cytidine/deoxycytidylate deaminase fa... 593 8e-169
> AT4G29640.1 | Symbols: | Cytidine/deoxycytidylate deaminase
family protein | chr4:14525830-14526870 FORWARD LENGTH=1041
Length=1041
Score = 593 bits (321), Expect = 8e-169
Identities = 450/511 (88%), Gaps = 14/511 (3%)
Strand=Plus/Plus
Query 21 ATGGCTCAACAGTACAAGTTCGTTTTCACTAACGAAGAAGCCGCATCCGAAGGTGTCACC 80
||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1 ATGGCACAACAGTACAAGTTCGTTTTCACTGCCGAACAAGCCGCATCCGAAGGTGTCACC 60
Query 81 GACCACAAGAAACTTCCAAAACTAATC-GAAAAGGCTAGGAATCTCGCTAAGGTTCCAAT 139
||||||||||||||||| || |||||| |||| |||||||||||||| ||| | ||||
Sbjct 61 GACCACAAGAAACTTCCGAAGCTAATCAGAAA-GGCTAGGAATCTCGTTAAAGCACCAAG 119
Query 140 CAAAGTCGGAGCCATTGGACGCGCATCATCTGGTCGGGTCTACTTAGGCGCCAATGTCGA 199
||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| ||
Sbjct 120 CAAAGTCGGAGCCGTTGGACGCGCATCATCTGGTCGATTCTACTTAGGCGTCAATGTAGA 179
Query 200 ATTTGAAGGTCTTTCT-CCT-AGCCTTTCAATCCAAGCTGAACAATTCCTAATCGCCAAC 257
|||| |||||||| || ||| | |||| ||||| ||||| |||||||| |||||||||
Sbjct 180 ATTTAAAGGTCTT-CTTCCTCATT-TTTCCATCCACGCTGAGCAATTCCTGATCGCCAAC 237
Query 258 CTCGCCCTCAACCTC-GAGTCAAAACTCACTCACTTAGCCGTCTCCCATAATGGCACCGT 316
|| |||||||| || ||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 238 CTTGCCCTCAAT-TCCGAGCCAAAACTCACTCACTTAGCCGTCTCCGATAATGGCACCGT 296
Query 317 CTTCCACGACCCGTGCTACCG-CTGCACCCACTTTCTTCAGGAGATGACCGATGCACCTC 375
|||||| |||||||||||| | |||||||| ||||||| ||||||| | | |||||| ||
Sbjct 297 CTTCCAAGACCCGTGCTAC-GACTGCACCCGCTTTCTTAAGGAGATCAACAATGCACATC 355
Query 376 AAATAGAAATTCTGATAAAAAACAGAA-ACGAC-GAAGACGGATCATTCAAGAGCCTCGA 433
|||| ||||||||||| |||||| | ||| | || |||||||||||||||||||||||
Sbjct 356 AAATTGAAATTCTGATCAAAAAC-GCTCACGGCCGA-GACGGATCATTCAAGAGCCTCGA 413
Query 434 GAGCCACATGCCAGACAAATTCGGCCCCGAAAGTATCCTCCCGGCAGAACCGTCTCTCCT 493
|||||||||||||||| |||||||| |||||||||||||| |||||||||| ||||||||
Sbjct 414 GAGCCACATGCCAGACGAATTCGGCTCCGAAAGTATCCTCTCGGCAGAACCCTCTCTCCT 473
Query 494 TCTCGTGGAGTGTGATAACCGTCTCGCCCTC 524
|||| ||||| | |||||| |||||||||||
Sbjct 474 TCTCATGGAGCGCGATAACTGTCTCGCCCTC 504
Score = 449 bits (243), Expect = 2e-125
Identities = 311/344 (90%), Gaps = 4/344 (1%)
Strand=Plus/Plus
Query 535 ACCTTTATCCCCTTCTAAAGTTGGTGGCTTTACAGGCGGCGAAAAAATCATACGCGCCAC 594
|||||| | || |||||||||||| |||| || |||||||||| |||||||||||||||
Sbjct 548 ACCTTTGTTCCTTTCTAAAGTTGGAGGCTCTAAAGGCGGCGAACAAATCATACGCGCCAT 607
Query 595 ACAGCAAGTGTCCGTCGGGGGTGGCGCTGGTTTGCGAAGGGAAAGTGTATAG-AGGATGG 653
|||| ||||||||||| |||||||||||| ||||||||||| |||||||| | |||||||
Sbjct 608 ACAGAAAGTGTCCGTCAGGGGTGGCGCTGTTTTGCGAAGGGGAAGTGTAT-GCAGGATGG 666
Query 654 TACATTGAAACGGTGGCGT-ATAATATTAGTTTGGGGCCAGTACAAGCGGCGCTGGTTGA 712
||||||||||| |||| | | |||||||||||||||||||||||||||||||||||
Sbjct 667 TACATTGAAACAGTGG-ATCGGACCATTAGTTTGGGGCCAGTACAAGCGGCGCTGGTTGA 725
Query 713 TTTCATGGCTCGTGGCGAAGGCAAAGGGTTCGATAAGATCACCCGAGCTGTGCTGGTGGA 772
|||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 726 TTTCATAGCTCGTGGCGAAGGCAAAGGGTTCGATAAGATCACTGGAGCTGTGCTAGTGGA 785
Query 773 GAAGAAGGATGCGAAGGTTAGGCAAGAGGACACGGCGAGGACGCTTCTAGAGAAGATAGC 832
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 786 GAAGAAGGATGCGAAGGTGGGGCAAGAGGACACGGCGAGGAAGCTTCTAGAGAAGATAGC 845
Query 833 AGCTCCGAACTGCGATTTTAAGGTCTTCCATTGCTACGAGCAGC 876
|||||||||||||||||| ||||||||||||||| | ||| |||
Sbjct 846 AGCTCCGAACTGCGATTTCAAGGTCTTCCATTGCCAGGAGGAGC 889
Score = 130 bits (70), Expect = 3e-29
Identities = 111/129 (86%), Gaps = 9/129 (7%)
Strand=Plus/Plus
Query 749 GATCACCCGAGCTGTGCTGGTGGAGAAGAAGGATGCGAAGGTTAGGCAAGAGGACACGGC 808
||||||| |||||||||| |||||||||||||||||||||| ||||||| | ||
Sbjct 900 GATCACCGGAGCTGTGCTAGTGGAGAAGAAGGATGCGAAGGAGGGGCAAGA-G----GG- 953
Query 809 GAGGACGCTTCTAGAGAAGATAGCAGCTCCGAACTGCGATTTTAAGGTCTTCCATTGCTA 868
|| | |||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
Sbjct 954 GA--A-GCTTCTAGAGAAGATAGCAGCTCCGAACTGCGATTTCAAGGTCTCCCATTGCGA 1010
Query 869 CGAGCAGCT 877
|||| ||||
Sbjct 1011 CGAGGAGCT 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45562371329
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5