BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945056
Length=1057
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29550.1 | Symbols: | Protein of unknown function (DUF626) ... 743 0.0
AT4G29580.2 | Symbols: | Cytidine/deoxycytidylate deaminase fa... 265 8e-70
> AT4G29550.1 | Symbols: | Protein of unknown function (DUF626)
| chr4:14502212-14503847 FORWARD LENGTH=1236
Length=1236
Score = 743 bits (402), Expect = 0.0
Identities = 549/617 (89%), Gaps = 22/617 (4%)
Strand=Plus/Plus
Query 432 AGATTCTGTGCGCTTATGACTTACCATATAACTGCTGAGGCTGTTGATCCGGACAACGAC 491
|||||||||||||||||||||||| | || |||||||||||||||||||| | ||||||
Sbjct 547 AGATTCTGTGCGCTTATGACTTACAACATTACTGCTGAGGCTGTTGATCCAGCCAACGA- 605
Query 492 TT-ACGTTTCACTTTTCAGACCTGTGTTACACA-AGCTACATGT-AAGAATGATGAAGAC 548
|| |||||||||||| ||||| |||||||| || |||||||||| || || |||||||||
Sbjct 606 TTCACGTTTCACTTTCCAGACATGTGTTAC-CAGAGCTACATGTCAA-AAAGATGAAGAC 663
Query 549 CTGAGGATACTGACTGAAGTTTGTAGAATAAAACCAAAGATTCAAGGTACTGGAGAC-AA 607
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||
Sbjct 664 CTGAGGATACTGACTGAAGTCTGTAGAATTAAACCAAAGATTCAAGGTACTGGAGACGAA 723
Query 608 ACCAAAGCGATGGAATGGCGAAGCTATTGATGATTTCTACAAAGGCGATCTACCTAAGTG 667
| |||||||||||||| |||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 724 A-TAAAGCGATGGAATGACGAAGCTATTGATGATATCTACAAAGGCAATCTACCTGAGTG 782
Query 668 GATATCGGATGATGCTTTGATGCCATGCAGTGAGCAAGATCAGTTTTATGA-GGTGCAGG 726
||| ||||||||| |||||||| ||||||||||||||||||| |||||| | |||||| |
Sbjct 783 GATTTCGGATGATACTTTGATGTCATGCAGTGAGCAAGATCACTTTTAT-AGGGTGCAAG 841
Query 727 AGTCAGAGATCCGAGAACACAACTGGCTT-AATCTATACACTGAAATCGCGT-TATACTC 784
||||||| ||||||||||||||||||||| || ||||||||||| || |||| | |||||
Sbjct 842 AGTCAGACATCCGAGAACACAACTGGCTTCAA-CTATACACTGAGATTGCGTCT-TACTC 899
Query 785 GCTCTGGGAAGGAGACATGAGGCT-AGAGTCTTGTGTGCCGGTGCAGATTATGAAGGTCA 843
||| |||||||||||||||||||| | |||||||||||||| ||||||||| ||| |||
Sbjct 900 GCTGTGGGAAGGAGACATGAGGCTCA-AGTCTTGTGTGCCGCTGCAGATTAAGAATGTCC 958
Query 844 TTGTA-GAGACTCGTGAAGCTGTGGAGTCAAAGGAAAAGTTGATGGCTGGGAATGCAATC 902
||||| || |||||||||| | | | |||||||||||| | | |||||||||||| |||
Sbjct 959 TTGTACGA-ACTCGTGAAGATTTTAAATCAAAGGAAAAGCTCAAGGCTGGGAATGCCATC 1017
Query 903 TTCTACATTAGTTTCAGATACT-TGAATGCTCCTCATGGTCCACCTCAAGATCACAGAGC 961
|||||||||||||| || | | ||| |||||||||||||||||||||||||||||||
Sbjct 1018 TTCTACATTAGTTTTAG-GGGTGTCAATACTCCTCATGGTCCACCTCAAGATCACAGAGC 1076
Query 962 CATTGTAAGAAGAACCGTTGATGGGATTCCAGGACATGTTTGTCTTGTGTTTAAGTGTTG 1021
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1077 CATTGTAAGAAGAACCGTCGATGGGATTCCAGGACATGTTTGTCTTGAGTTTAAGTGTTT 1136
Query 1022 GCTCCA-GGATCTGTGA 1037
|||| | ||||||||||
Sbjct 1137 GCTC-ATGGATCTGTGA 1152
Score = 193 bits (104), Expect = 4e-48
Identities = 136/151 (90%), Gaps = 3/151 (2%)
Strand=Plus/Plus
Query 84 GATGTAGTTAGTAGCGGTTTTATATCGGAAGAAGAATGGTCTGCCGCTGTAAATAACGAT 143
|||||| |||||||| ||||||||||| ||||||||| ||||| ||||||| ||||||||
Sbjct 223 GATGTATTTAGTAGCAGTTTTATATCGAAAGAAGAATTGTCTGACGCTGTACATAACGAT 282
Query 144 CCACCATCTGGATGGACTGACGAAGATGATGATGATGTGGTC-AC--GGATTTGGAGCAA 200
|||||||||||||||||||||||||||||||||||| ||| || || ||||||| ||
Sbjct 283 CCACCATCTGGATGGACTGACGAAGATGATGATGATCAGGTTGACCCGGCTTTGGAGAAA 342
Query 201 GAGTTATATCGCCAAATTCGCGAATCCGACG 231
||||| |||||||||||||||||||||||||
Sbjct 343 GAGTTCTATCGCCAAATTCGCGAATCCGACG 373
Score = 159 bits (86), Expect = 4e-38
Identities = 115/128 (90%), Gaps = 6/128 (5%)
Strand=Plus/Plus
Query 307 GTTCGACATACGTATTCCGAGTAGTTTTCTTTATGTGTACAAATGTGCTAACAATGATTA 366
||| |||||||||||||||| ||||| |||||||||||||||||||| ||||||||| |
Sbjct 382 GTT-GACATACGTATTCCGACTAGTTCACTTTATGTGTACAAATGTGCCAACAATGATGA 440
Query 367 -CTATCGTGATGCTGACATTGTTGGCATTTGCGCTAGAGTGGGACTCCATTGGTACAACT 425
|| ||||| | |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 441 CCT-TCGTG--G-TGACATTGTTGGCATTTGTGCTAGAGTGGGACTCCATTGGTACAACT 496
Query 426 TTCACAAG 433
|||| |||
Sbjct 497 TTCAAAAG 504
Score = 80.5 bits (43), Expect = 3e-14
Identities = 99/124 (80%), Gaps = 11/124 (9%)
Strand=Plus/Plus
Query 61 TTGAAGAGATCACCGTGTCGCATGATGTAGT-TAGTAGCGGTTTTATATCGGAAGAAGAA 119
||||||| | |||||| || ||||||||| | |||| |||||||||||||| ||||||||
Sbjct 104 TTGAAGAAACCACCGTATCTCATGATGTA-TCTAGTTGCGGTTTTATATCGAAAGAAGAA 162
Query 120 TGGTCTGCCGCTGTAAATAACGATCCA-C--CATCTGGATGGACTGACGAAGATGATGAT 176
|||| | |||| | | | ||| | ||||||||||||||||||||||||||||
Sbjct 163 TGGT-T----AAATAAACATCCA-CCATCTGGATCTGGATGGACTGACGAAGATGATGAT 216
Query 177 GATG 180
|||
Sbjct 217 AATG 220
> AT4G29580.2 | Symbols: | Cytidine/deoxycytidylate deaminase
family protein | chr4:14510147-14512186 FORWARD LENGTH=1338
Length=1338
Score = 265 bits (143), Expect = 8e-70
Identities = 196/220 (89%), Gaps = 10/220 (5%)
Strand=Plus/Plus
Query 471 GCTGTTGATCCGGACAACGACTT-ACGTTTCACTTTTCAGAC-CTGTGTTACACA-AGCT 527
||||||||||| |||||| || |||||||||||| ||||| | ||||||| | ||||
Sbjct 1126 GCTGTTGATCCATCCAACGA-TTCACGTTTCACTTTCCAGACAC-GTGTTAC-GAGAGCT 1182
Query 528 ACATGTAAGAATGATGAAGACCTGAGGATACTGACTGAAGTTTGTAGAATAAAACCAAAG 587
|||||| |||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1183 ACATGTCAGAAAGATGAAGACCTGAGGATACTGACTGAAGTCTGTAGAATTAAACCAAAG 1242
Query 588 ATTCAAGGTACTGGAGACAAACCAAAGCGATGGAATGGCGAAGCTATTGATGATTTCTAC 647
||||||||||||||||| | | |||||||||||||| |||||||||||||| |||||||
Sbjct 1243 ATTCAAGGTACTGGAGA-A--C-AAAGCGATGGAATGACGAAGCTATTGATGGTTTCTAC 1298
Query 648 AAAGGCGATCTACCTAAGTGGATATCGGATGATGCTTTGA 687
|||||| |||||||||||||||||||||||||| |||||
Sbjct 1299 AAAGGCTATCTACCTAAGTGGATATCGGATGATATTTTGA 1338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51841639704
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5