BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945073
Length=389
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29450.1 | Symbols: | Leucine-rich repeat protein kinase fa... 442 1e-123
AT4G29180.2 | Symbols: RHS16 | root hair specific 16 | chr4:143... 117 8e-26
> AT4G29450.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr4:14478837-14482626 REVERSE LENGTH=2592
Length=2592
Score = 442 bits (239), Expect = 1e-123
Identities = 258/267 (97%), Gaps = 2/267 (1%)
Strand=Plus/Plus
Query 103 AGCGAGCCATCATCAAAACAGAAGAAGGAGACAATATCAGCGTGATTCACTACGTTTGGC 162
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2327 AGCGAGCCATCATCAAAACAGAAGAAGGAGACAATATCAGCGTTATTCACTACGTTTGGC 2386
Query 163 CGTTCTTTGAGGCTAGAGAACTAGACGGCGTCGTGGACCCGCTGCTTCGGGGAGACTTCT 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2387 CGTTCTTTGAGGCTAGAGAACTAGACGGCGTCGTGGACCCGCTGCTTCGGGGAGACTTCT 2446
Query 223 CGGAGGACTCAGCTTGGAAGTTTGTGGATGTGGCAATGTCTTGCGTCAGAGATAAAGGAT 282
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2447 CGCAGGACTCAGCTTGGAAGTTTGTGGATGTGGCAATGTCTTGCGTCAGAGATAAAGGAT 2506
Query 283 CCAATAGACCAACAATGAACCAGATCGTGGCGGAGCTGAAACAGTGCTTAGCCGCTGAGC 342
| ||||||||||| |||||||||||||| |||||||||||||||||| |||| |||||||
Sbjct 2507 CGAATAGACCAACGATGAACCAGATCGTAGCGGAGCTGAAACAGTGCCTAGCTGCTGAGC 2566
Query 343 TGG-CTCGTGAGCCACAGAGCCAGTGA 368
||| | |||||||||||||||||||||
Sbjct 2567 TGGAC-CGTGAGCCACAGAGCCAGTGA 2592
> AT4G29180.2 | Symbols: RHS16 | root hair specific 16 | chr4:14385593-14389689
FORWARD LENGTH=2945
Length=2945
Score = 117 bits (63), Expect = 8e-26
Identities = 91/103 (88%), Gaps = 7/103 (7%)
Strand=Plus/Plus
Query 7 AAATTGCTGTAAAGATGATCAACGATTCTTCATTTGGAAAATCTAAAGGATCTTCAAC-T 65
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 1810 AAATTGCTGTAAAGATGATCAACGATTCTTCTTTTGGAAAATCTAAAGGATCTTCATCAT 1869
Query 66 --TCATCATCATCCCGGG-CTTCTA-GCCAATTCCAAGTCGAG 104
||||||||||||| || || | | | ||||||||||||||
Sbjct 1870 CATCATCATCATCCCAGGTCTCCAAAG--AATTCCAAGTCGAG 1910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18347728385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5