BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945078
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29400.1 | Symbols: | Protein of unknown function (DUF3531)... 1273 0.0
> AT4G29400.1 | Symbols: | Protein of unknown function (DUF3531)
| chr4:14466295-14468143 FORWARD LENGTH=1127
Length=1127
Score = 1273 bits (689), Expect = 0.0
Identities = 858/937 (92%), Gaps = 22/937 (2%)
Strand=Plus/Plus
Query 1 AAG-AAGAAGAAGATAAGATAATGCTAAGGTTTCAATGTTCACTTCACCTTCTTCAGCCT 59
||| |||||||||| || |||||||||||||||||||||| ||||||||||||||||||
Sbjct 35 AAGTAAGAAGAAGAAAAAATAATGCTAAGGTTTCAATGTTTTCTTCACCTTCTTCAGCCT 94
Query 60 TCTATTGCTAAGAAGAACCA-CAACCACTCGAATATTT-CTTCCTACAATTTGGCGCCGT 117
||||| || ||||| || || ||||||||||||||||| || | |||||||||||||||
Sbjct 95 TCTATGGCGAAGAACAA-CAGCAACCACTCGAATATTTGTTTAC-ACAATTTGGCGCCGT 152
Query 118 TTCGGGTCACCG----G----C---AC-GAAGATCCAGGAGATACGTACGATTTGGCCGA 165
|||||||||||| | | || ||||||||||||| ||||| ||| | || |||
Sbjct 153 TTCGGGTCACCGACACGATTCCTGTACAGAAGATCCAGGAGTTACGTGCGAATCGGTCGA 212
Query 166 GGAATAGTGGAAAGTTGCGAGTAAATGGTATAGGTCgagaaatggaagaaggtg-gagaa 224
|| | ||||||||||||||||||||||| |||||| |||||||||||||||||| | |||
Sbjct 213 GGGAGAGTGGAAAGTTGCGAGTAAATGGAATAGGTAGAGAAATGGAAGAAGGTGTG-GAA 271
Query 225 gaatttgaagaag-a-a-gatggagatgatgaagaggtagaagatgagTTGTCTTCGAGG 281
||||| ||||||| | | |||||||||||||| ||||||||||||||||| || ||| |
Sbjct 272 GAATTCGAAGAAGTAGATGATGGAGATGATGATGAGGTAGAAGATGAGTTCTCGGCGAAG 331
Query 282 AAGAGAGGCGTTTACGGAGCGAAAAAAGAGAAGATAGATTACGACAAAGACCCAGAATTC 341
||||||||||||||| ||||||| ||||||||||| |||||||| |||||||| || ||
Sbjct 332 AAGAGAGGCGTTTACAGAGCGAAGAAAGAGAAGATTGATTACGATAAAGACCCTGAGTTT 391
Query 342 GCGGATATTCTTGGAGATTGTTTAGATAACCCAGAGAAAGCTCAAAAGAAGATGGAAGAG 401
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 392 GCGGATATTCTTGGAGATTGTTTAGATAACCCAGATAAAGCTCAAAAGAAGATGGAAGAG 451
Query 402 AGGTTGAGGAAGAAGAGGAACAAAATCCTGCATACTAAGACTGGTTCTGCAACTTCGATG 461
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 452 AGATTGAGGAAGAAGAGGAACAAAATTCTTCATACTAAGACTGGTTCTGCAACTTCGATG 511
Query 462 CAAGTGACGTTTAACAAATTTGAGTATTCGAATTCATACATGTGGTTGGAGTTTTACAAT 521
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 CCAGTGACGTTTAACAAATTTGAGTATTCGAATTCATACATGTGGTTGGAGTTTTACAAC 571
Query 522 GCTCCTCTGGATAAAGACATAGCCTTGATCTCTGATACTATCCGTTCATGGCATATCCTT 581
| || ||||| |||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 572 ACACCGCTGGACAAAGACATAGCCTTGATCTCTGATACAATCCGGTCCTGGCATATCCTT 631
Query 582 GGACGACTTGGTGGATACAACTCCATGAATATGCAATTATCACAAGCGCCACTGGATAAG 641
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 632 GGACGACTTGGTGGATACAACTCCATGAATATGCAATTATCACAAGCACCACTGGATAAG 691
Query 642 AGACCAAACTATGATGCTATCCTTGGAGCTAATGTCGAGCCCACCACATTTTATAATATC 701
|| |||||||||||||| || |||||||||||||||||||||||||| |||||||| |||
Sbjct 692 AGGCCAAACTATGATGCCATACTTGGAGCTAATGTCGAGCCCACCACGTTTTATAACATC 751
Query 702 GGGGATCTTGAGGTCCAAGACAACATCGCTCGCATATGGCTCGATATTGGGACCTCGGAG 761
|||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 752 GGGGATCTTGAGGTTCAAGACAATGTCGCTCGAATATGGCTCGATATTGGGACCTCGGAG 811
Query 762 CCTTTGATTCTTGATGTTCTGATAAACGCATTGACACAAATCAGCTCAGATTATGTCGGG 821
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 CCGTTGATTCTCGATGTTCTGATAAACGCATTGACACAAATCAGCTCAGATTATGTCGGG 871
Query 822 ATAAAGAAAGTTGTGTTTGGTGGATCTGAGTTCGAAAGCTGGAAGGAGAATATGACATCC 881
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 872 ATAAAGAAAGTTGTGTTTGGTGGATCTGAGTTCGAGAGCTGGAAGGAGAATATGACATCC 931
Query 882 GAGGAATCTGGTTTCAGAGTCCACAAGATTTAACATC 918
|||||||||||||||||||||||||||||||||||||
Sbjct 932 GAGGAATCTGGTTTCAGAGTCCACAAGATTTAACATC 968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45662839623
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5