BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945082

Length=1204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G29370.1 | Symbols:  | Galactose oxidase/kelch repeat superf...   296    3e-79


> AT4G29370.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr4:14455602-14456738 FORWARD LENGTH=1137
Length=1137

 Score =  296 bits (160),  Expect = 3e-79
 Identities = 264/311 (85%), Gaps = 19/311 (6%)
 Strand=Plus/Plus

Query  21   ATGATCCCGGAAGAAGAAGTTGAGCCGCCGCAGaaaaaaaCGAAGCTTCCGCCGCTACCA  80
            ||||||||  ||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct  1    ATGATCCCCAAAGAAGAAGTTGAGCGGCCGCAGAAAAAAACGAAGCTTCCGTCGTTACCA  60

Query  81   TGTCAGTCGTCG-T-TT-TTGTC-ACTTCCCAACGAAATCATTGTGAACTGCTTTGCACG  136
            ||| || ||||| | || ||| | ||||||| |||| ||| | ||||||||||| |||||
Sbjct  61   TGTGAGACGTCGTTGTTCTTG-CAACTTCCCGACGAGATCCTGGTGAACTGCTTGGCACG  119

Query  137  TATCTCTAAATCGTCTTACCGTTCACTCTCCCTCGTCTGCAAAACCTTTCGTTCTCTCAT  196
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  120  TCTCTCTAAATCGTCTTACCGTTCACTCTCCCTCGTCTGCAAAACCTTTCGTTCTCTCCT  179

Query  197  CT-CTTCTCCAGACCTCTA-TGCCGCGCGATCTCAACTTGGAACCACCGAGATCTGCGGC  254
            |  || ||| |  |||||| | ||||||||| |||||| |||||||| ||||||||| ||
Sbjct  180  CCACT-CTCAACCCCTCTACT-CCGCGCGATATCAACTCGGAACCACGGAGATCTGCTGC  237

Query  255  CTCTATCTCTGTCTACGGTTC-TCCACCGTGCCATTCAAGGAACCAA-CTCGACGCTGGT  312
            || |||||||||||||||||  |  ||||  | |  |  |||||||  ||| ||||||||
Sbjct  238  CTTTATCTCTGTCTACGGTTTGTT-ACCG--CTA--C--GGAACCAGTCTC-ACGCTGGT  289

Query  313  TCACTCTCAGT  323
            | |||||||||
Sbjct  290  TTACTCTCAGT  300



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 59136242010


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5