BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945083

Length=1202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G39560.1 | Symbols:  | Galactose oxidase/kelch repeat superf...   108    2e-22


> AT5G39560.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr5:15841692-15843169 REVERSE LENGTH=1478
Length=1478

 Score =  108 bits (58),  Expect = 2e-22
 Identities = 122/152 (80%), Gaps = 8/152 (5%)
 Strand=Plus/Plus

Query  714  CAATGCTTTCCAAGGAAAGCTTTATGTAAG-GGGAGATACAAAGGACTACACTTACGAGC  772
            |||||||||  ||||||||||||| || || || | | | ||| ||||||||||||||||
Sbjct  820  CAATGCTTTGGAAGGAAAGCTTTACGT-AGCGGCACAGATAAATGACTACACTTACGAGC  878

Query  773  CGAAAGAAGGTACATGGGAAGTTGTTAAAGAGAAAGCAAGT-GCA-TATA-TAGAGGTTT  829
            | ||||| | ||||||| |||||| | |||  ||| |||||   |  | | || ||||||
Sbjct  879  CCAAAGATGATACATGGAAAGTTG-T-AAG-CAAATCAAGTATAAGAAGAGTAAAGGTTT  935

Query  830  GGTGTGTGATAGAGAATGTAATTTATGGTTGC  861
            |||||||||||||||||||||| || | ||||
Sbjct  936  GGTGTGTGATAGAGAATGTAATGTACGCTTGC  967



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 59035840920


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5