BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945085
Length=1652
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29360.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 2527 0.0
AT5G56590.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 141 2e-32
> AT4G29360.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr4:14451421-14453915 REVERSE LENGTH=1974
Length=1974
Score = 2527 bits (1368), Expect = 0.0
Identities = 1554/1642 (95%), Gaps = 19/1642 (1%)
Strand=Plus/Plus
Query 1 GAGAAAGACAGA-TTATG-AAAATGGGTAC-AAGACTGAAGCTAATCTTCTGGATTTGTG 57
|||||||||||| | | ||||||||| | ||||||||| ||| |||||||||||| ||
Sbjct 207 GAGAAAGACAGAGGAAAGAAAAATGGGT-CAAAGACTGAATCTAGTCTTCTGGATTTTTG 265
Query 58 TCTCCATTGTTGCCTTCTTGGATTTTGGTAAGGCAAGCAAGATTGGGATATGTTATGGAA 117
|||||||| ||||||| ||| ||||||||| ||| |||||||||||||||||||||||||
Sbjct 266 TCTCCATTCTTGCCTTTTTGAATTTTGGTATGGCTAGCAAGATTGGGATATGTTATGGAA 325
Query 118 GAAATGCTGATAATCTTCCGAGTCCTAACAGAGTCTCTGAGCTAATCCAACATCTCAACA 177
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 326 GAAATGCTGATAATCTTCCAAGTCCTAACAGAGTCTCTGAGCTAATCCAACATCTCAACA 385
Query 178 TCAAATTTGTTCGAATCTATGACGCCAACATTGATGTTCTTAAAGCTTTTGCAAACACTG 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 TCAAATTTGTTCGAATCTATGACGCCAACATTGATGTTCTTAAAGCTTTTGCAAACACTG 445
Query 238 GAGTCGAGCTTATGATTGGTGTCCCTAACGCTGATCTACTTGCATTTGCTCAGTTTCAAT 297
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 GAATCGAGCTTATGATTGGTGTCCCTAACGCTGATCTACTTGCATTTGCTCAGTTTCAAT 505
Query 298 CCAATGTAGATACTTGGCTTAGCAACAACATCCTCCCTTATTATCCAGCTACCAAAATCA 357
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 506 CCAATGTAGATACTTGGCTTAGCAACAACATCCTTCCTTATTATCCATCTACCAAAATCA 565
Query 358 CTTCGATTTCTGTCGGTCTTGAAGTAACCGAAGCACCAGACAATGCCACTGGTCTAGTCT 417
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 566 CTTCGATTTCAGTTGGTCTTGAAGTAACTGAAGCACCAGACAATGCCACTGGTCTAGTCT 625
Query 418 TACCCGCGATGCGAAACATTCACACTGCTCTTAAGAAGTCTGGTTTGGATAAAAAGATCA 477
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 626 TACCTGCGATGCGAAACATTCACACAGCTCTTAAGAAGTCTGGTTTGGATAAAAAGATCA 685
Query 478 AGATCTCGAGCTCACATTCCCTTGCTATCTTGTCACGCTCGTTCCCGCCTTCATCGGCTT 537
|||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 686 AGATCTCGAGCTCACATTCCCTTGCTATCTTGTCACGCTCCTTCCCGCCTTCGTCAGCTT 745
Query 538 CTTTCAGCAAGAAGCACTCAGCGTTCTTGAAACCAATGCTTGAGTTCTTGGTTGAGAATG 597
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 CTTTCAGCAAGAAGCATTCAGCGTTCTTGAAACCAATGCTTGAGTTCTTGGTTGAGAATG 805
Query 598 AGTCTCCGTTTATGATCGACTTGTATCCGTATTATGCTTACAGAGATTCCACTGAAAAGG 657
||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 806 AGTCTCCCTTTATGATAGACCTGTATCCGTATTATGCTTACAGAGATTCCACTGAAAAAG 865
Query 658 TTCCGTTGGAGTACGCTCTATTCGAGTCATCTTCGCAGGTTGTTGACCCTGCCACGGGTT 717
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 866 TTCCGTTGGAGTATGCTCTATTCGAGTCATCTTCGCAGGTTGTTGATCCTGCCACGGGTT 925
Query 718 TGCTTTACTCCAACATGTTTGATGCTCAGCTTGACGCTATCTATTTCGCCTTGACGGCTA 777
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 926 TGCTTTACTCCAACATGTTTGATGCTCAGCTTGACGCTATCTATTTCGCTTTGACTGCTA 985
Query 778 TGAACTTTAAGACCGTTAAGGTTATGGTCACTGAGTCGGGGTGGCCGAGTAAAGGCTCAC 837
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 986 TGAGCTTTAAGACCGTTAAGGTTATGGTCACTGAGTCCGGGTGGCCGAGTAAAGGCTCGC 1045
Query 838 CTAAAGAGACGGCTGCAACTCCTGATAACGCTCTGGCTTACAATACCAACCTCATCCGCC 897
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1046 CTAAAGAGACAGCTGCAACTCCTGAGAACGCTCTGGCTTACAATACCAACCTCATCCGCC 1105
Query 898 ATGTCATCGGCGATCCAGGTACTCCTGCAAAGCCTGGAGAAGAGATAGATGTGTACTTAT 957
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 ATGTCATTGGTGATCCAGGTACTCCTGCAAAGCCTGGAGAAGAGATAGATGTGTACTTAT 1165
Query 958 TCTCGTTGTTCAATGAGAACCGGAAGCCCGGGATAGAATCTGAGAGAAACTGGGGAATGT 1017
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1166 TCTCGTTGTTCAATGAGAACCGGAAGCCTGGGATAGAATCCGAGAGAAACTGGGGAATGT 1225
Query 1018 TCTACGCGAACGGAACAAATGTTTACGCTTTAGACTTTACTGGGGAAAACACTACCCCAG 1077
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |
Sbjct 1226 TCTACGCGAACGGAACTAATGTTTACGCTTTAGACTTCACTGGGGAAAACACTACGCCTG 1285
Query 1078 TTTCTCCAACAAATTCAACCACGGGTACCAGTCCAAGTCCAAGTTCAAGTCCAATTAGC- 1136
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1286 TTTCTCCAACAAATTCAACCACAGGTACCAGTCCAAGTCCAAGTTCAAGTCCAATTATCA 1345
Query 1137 --GGTAACTCGACCGTAATCATTggaggaggaggaggaggagggggaggaACCAAGAAAT 1194
||||||||||| |||| ||| |||||||||||||||||||| | | |||||||||
Sbjct 1346 ACGGTAACTCGACAGTAACCATCGGAGGAGGAGGAGGAGGAGG---A--A-CCAAGAAAT 1399
Query 1195 GGTGTATTGCTTCTTCACAAGCTTCAGTGACAGAACTGCAGACCGCGTTGGACTGGGCTT 1254
||||||||||||||||||||||||| || || ||||||||||| || |||||||||||||
Sbjct 1400 GGTGTATTGCTTCTTCACAAGCTTCGGTAACGGAACTGCAGACTGCATTGGACTGGGCTT 1459
Query 1255 GTGGTCCTGGAAATGTTGATTGTTCCGCTGTTCAACCAGACCAACCTTGCTTTGAACCAG 1314
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1460 GTGGTCCTGGAAATGTTGATTGTTCAGCTGTTCAACCAGACCAACCTTGCTTTGAACCAG 1519
Query 1315 ACACTGTTCTCTCACACGCATCGTATGCGTTCAACACTTATTACCAACAGAGCGGAGCAA 1374
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1520 ATACTGTTCTCTCACACGCATCTTATGCATTCAACACTTATTACCAACAGAGCGGAGCAA 1579
Query 1375 GCAGAATAGATTGCAGCTTTAATGGAGCCAGCGTTGAAGTCGACAAGGACCCAAGTTATG 1434
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1580 GCAGCATAGATTGCAGCTTTAATGGAGCCAGCGTTGAAGTTGACAAGGATCCAAGTTATG 1639
Query 1435 GTAACTGTTTGTACATGATTGCTCCGGCTACCGACGGATTCAACAGAACAATGGCGGGTA 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1640 GTAACTGTTTGTACATGATTGCTCCGGCTACCGACGGATTCAACAGAACAATGGCGGGTA 1699
Query 1495 ACATCACTGGAAATATAACTGCCATTGATTCTCCCTTGGCTTCGCCTTCGTCAACCAATG 1554
| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1700 ATATCACTGGAAACATAACTGCCATTGATTCCCCCTTGGCTTCGCCTTCGTCAACCAATG 1759
Query 1555 AAGCATTCAGACAAATGGTGATTTCCCTTGCAGTCTCTGTTTTGTTGCCGTGTTTTGTAA 1614
|||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1760 AAGCATTCAGACAAATGGTGGTT------GCAGTCTCTGTTTTGTTGCCGTGTTTTGTAG 1813
Query 1615 TTTGTTTGAGTATTTGATGACA 1636
|||||| ||||||||| |||||
Sbjct 1814 TTTGTTCGAGTATTTGGTGACA 1835
> AT5G56590.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr5:22907319-22909559 FORWARD LENGTH=1846
Length=1846
Score = 141 bits (76), Expect = 2e-32
Identities = 194/249 (78%), Gaps = 16/249 (6%)
Strand=Plus/Plus
Query 1194 TGGTGTATTGCTTCTTC-ACAAGCTTCAGTGACAGAACTGCAGA-CCGCGTTGGACTGGG 1251
||||| ||||||||||| | ||||||||| || ||| ||| | | || ||||| ||||
Sbjct 1307 TGGTGCATTGCTTCTTCTA-AAGCTTCAGAGAGAGATCTG-AAAGGTGCTTTGGATTGGG 1364
Query 1252 CTTGTGGTCCTGGAAATGTTGATTGTTCCGCTGTTCAACCA-GACCAACCTTGCTTTGAA 1310
||||||||||||||||||||||||| | ||| |||| ||| | ||| ||||| ||| ||
Sbjct 1365 CTTGTGGTCCTGGAAATGTTGATTGCACAGCTATTCAGCCAAG-CCAGCCTTGTTTTCAA 1423
Query 1311 CCAGACACTGTTC-TCTCACACGCATCGTAT-GCGTTCAACA-CTTATTACCAACAGAGC 1367
||||| ||| || | || || || || | | | |||||| | || ||| |||||||| |
Sbjct 1424 CCAGATACT-TTGGTTTCTCATGCTTCTT-TCGTGTTCAATAGCT-ATTTCCAACAGAAC 1480
Query 1368 GGAGCAAGCAGAA-TAGATTGCAGCTTTA-ATGGAGCCAGCGTTGAAGTCGACAAGGACC 1425
|||||| |||| | | |||||||||| | ||||| | ||| ||||| |||||||||
Sbjct 1481 AGAGCAA-CAGACGTTGCTTGCAGCTTTGGA-GGAGCTGGTGTTAAAGTCAACAAGGACC 1538
Query 1426 CAAGTTATG 1434
| |||||||
Sbjct 1539 CTAGTTATG 1547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81626086170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5