BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945086
Length=440
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29350.1 | Symbols: PFN2, PRO2, PRF2 | profilin 2 | chr4:144... 682 0.0
AT2G19760.1 | Symbols: PFN1, PRF1 | profilin 1 | chr2:8516787-8... 388 2e-107
> AT4G29350.1 | Symbols: PFN2, PRO2, PRF2 | profilin 2 | chr4:14450008-14451394
FORWARD LENGTH=798
Length=798
Score = 682 bits (369), Expect = 0.0
Identities = 417/439 (95%), Gaps = 7/439 (2%)
Strand=Plus/Plus
Query 1 TCTCGCCGGAGAAGAAGAAGAAAGATGTCGTGGCAATCGTACGTCGATGACCATCTCATG 60
||||||| | | |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 107 TCTCGCC-G-G-AGAAGAAGAAAGATGTCGTGGCAATCATACGTCGATGACCATCTCATG 163
Query 61 TGCGAGGTCGAAGGTAACCACCTCAAACACGCCGCCATCTTAGGCCAAGACGGCAGTGTC 120
|||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 164 TGCGAGGTCGAAGGCAACCACCTCACACACGCCGCCATCTTCGGCCAAGACGGCAGTGTC 223
Query 121 TGGGCTCAGAGCTC-TCATTTCCCTCAGTTGAAGCCTGAAGAGATAGTAGGAATCAACAA 179
|||||||||||||| | |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 224 TGGGCTCAGAGCTCAGC-TTTCCCTCAGTTGAAGCCTGCAGAGATAGCAGGAATCAACAA 282
Query 180 AGACTTTGAAGAAGCCGGACATCTTGCCCCAACCGGGCTTTTTCTTGGCGGTGAAAAGTA 239
||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 283 AGACTTTGAAGAAGCCGGACATCTTGCCCCAACCGGGCTATTCCTTGGCGGTGAGAAGTA 342
Query 240 CATGGTTGTCCAAGGTGAGGCTGGAGCCGTCATCCGAGGGAAAAAGGGACCTGGTGGAGT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 CATGGTTGTCCAAGGTGAGGCTGGAGCCGTCATCCGAGGGAAAAAGGGACCTGGTGGAGT 402
Query 300 CACTATCAAGAAGACTACTCAAGCTCTAGTCTTTGGCATCTATGATGAACCGATGACTGG 359
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 403 CACTATCAAGAAGACTACTCAAGCTCTAGTCTTTGGTATCTATGATGAACCGATGACCGG 462
Query 360 AGGGCAATGCAACTTGGTCGTCGAGAGGCTTGGTGATTACCTTATCGAGTCTGGTCTCTA 419
||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 463 AGGGCAATGCAACTTGGTCGTGGAGAGGCTCGGCGATTACCTTATCGAGTCTGGTCTCTA 522
Query 420 AGTTCACAT-AAAGTGCTT 437
||||||| | |||||||||
Sbjct 523 AGTTCAC-TCAAAGTGCTT 540
> AT2G19760.1 | Symbols: PFN1, PRF1 | profilin 1 | chr2:8516787-8518167
REVERSE LENGTH=783
Length=783
Score = 388 bits (210), Expect = 2e-107
Identities = 360/430 (84%), Gaps = 20/430 (5%)
Strand=Plus/Plus
Query 2 CTCGCCG--GA-GAAGAAGAAGAAAGATGTCGTGGCAATCGTACGTCGATGACCATCTCA 58
||||||| || |||||||||| |||||||| |||||||| ||||||||||| || || |
Sbjct 76 CTCGCCGAAGAGGAAGAAGAAG-AAGATGTCTTGGCAATCATACGTCGATGATCACCTTA 134
Query 59 TGTGCGAGGTCGAAGGTAACCACCTCAAAC-ACGCCGCCA-TCTTAGGCCAAGACGGCAG 116
|||| || |||||||| ||||| ||| | | |||||| | || | ||||||||||||||
Sbjct 135 TGTGTGATGTCGAAGGCAACCATCTC-ACCGCCGCCGCAATTC-TCGGCCAAGACGGCAG 192
Query 117 TGTCTGGGCTCAGAGCTCTCA--TTTCCCTCAGTTGAAGCCTGAAGAGATAG-TAGGAAT 173
|||||||||||||||| | || ||||| ||||||||||||| |||| || | | |||||
Sbjct 193 TGTCTGGGCTCAGAGCGC-CAAATTTCC-TCAGTTGAAGCCTCAAGAAATCGAT-GGAAT 249
Query 174 CAACAAAGACTTTGAAGAAGCC-GGACATCTTGCCCCAACCGGGCTTTTTCTTGGCGGTG 232
||| || |||||||| || ||| || ||||||||||||||| || ||||| || || |
Sbjct 250 CAAGAAGGACTTTGAGGA-GCCCGGGTTTCTTGCCCCAACCGGACTATTTCTCGGTGGCG 308
Query 233 AAAAGTACATGGTTGTCCAAGGTGAGGCT-GGAGCCGTCATCCGAGGGAAAAAGGGACCT 291
|||| ||||||||| |||||||||| | ||||| || ||||||||||| |||||||||
Sbjct 309 AAAAATACATGGTTATCCAAGGTGAA-CAAGGAGCTGTGATCCGAGGGAAGAAGGGACCT 367
Query 292 GGTGGAGTCACTATCAAGAAGACTA-CTCAAGCTCTAGTCTTTGGCATCTATGATGAACC 350
|| || ||||||||||||||||| | | |||||| | ||||||||| |||| ||||||||
Sbjct 368 GGAGGTGTCACTATCAAGAAGACAAAC-CAAGCTTTGGTCTTTGGCTTCTACGATGAACC 426
Query 351 GATGACTGGAGGGCAATGCAACTTGGTCGTCGAGAGGCTTGGTGATTACCTTATCGAGTC 410
||||||||||| |||||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct 427 AATGACTGGAGGTCAATGCAACTTGGTTGTCGAAAGGCTCGGGGATTACCTTATCGAGTC 486
Query 411 TGGTCTCTAA 420
|| ||||||
Sbjct 487 TGAACTCTAA 496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20911383584
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5