BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945090
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29310.1 | Symbols: | Protein of unknown function (DUF1005)... 2158 0.0
> AT4G29310.1 | Symbols: | Protein of unknown function (DUF1005)
| chr4:14437561-14439723 REVERSE LENGTH=1720
Length=1720
Score = 2158 bits (1168), Expect = 0.0
Identities = 1263/1310 (96%), Gaps = 1/1310 (0%)
Strand=Plus/Plus
Query 1 AACACTCGAAGGGTTTTGTGATGGATCCATGTCCATTTGTACGGCTAACAATAGATTCAC 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 AACACTCGAAGGTTTTTGTGATGGATCCATGTCCATTTGTACGGCTAACAATAGATTCAC 154
Query 61 TAGCGTTGAGACTACCGGAGACAGCGACGAACAAGCAAATCGGCGGCGAAATACATCCTT 120
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 155 TAGCTTTGAGACTACCGGAGACAGCGACGAACAAGCAAATCGGCGGCGAAGTACATCCTT 214
Query 121 CTTCAACGCCGTGTTACTGCAAACTCCGGATCAAACATTTCCCTTCCCAGAAAGCACTTC 180
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 215 CTTCTACGCCGTGTTACTGCAAACTCCGGATCAAACATTTCCCTTCACAGAAAGCACTTC 274
Query 181 TCCCTCTCTCTTCCTTCTCCGACGCTTCGTCTCCGCCGGAATCTTCCACTTCAGCTCCGG 240
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 275 TCCCTCTCTCTTCCTTCTCCGACGCTTCATCTCCACCGGAATCTTCCACTTCAGCTCCGG 334
Query 241 GATTTCACCTCGACGCCGAAGCTATCCGACGAGTTTCCGGTAAGAAGATCTCACTCCGAG 300
||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| |
Sbjct 335 GATTTCACCTCGACGCCGACGCGATCCGACGAATTTCCGGTAAGAAGATCTCACTCCGTG 394
Query 301 TCTCTGTTTACGCCGGTCGTACTGGTCACACTTGCGGCGTCGCTTCCGGGAAGCTTTTAG 360
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 395 TCTCTGTTTACGCCGGTCGTACTGGTCACACTTGCGGCGTCGCTTCAGGGAAACTTCTAG 454
Query 361 GAAAAGTCGAAGTAGCGGTGGATCTCGCGGCGGCGTTGTCTAGAACCGTCGCGTTTCATA 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 GTAAAGTCGAAGTAGCGGTGGATCTCGCGGCGGCGTTGTCTAGAACCGTCGCGTTTCATA 514
Query 421 ACGGATGGAAGAAACTCGGTGGAGAAGGAGATAAACCGTCGGCTCGGTTACATCTACTGG 480
||||||||||||||||||||||||| |||||||||||||||||| | ||||||||| |||
Sbjct 515 ACGGATGGAAGAAACTCGGTGGAGATGGAGATAAACCGTCGGCTAGATTACATCTATTGG 574
Query 481 TTCGTGCTGAACCGGATCCTCGGTTTGTATTTCAATTCGGTGGTGAACCGGAATGTAGTC 540
|| ||||||||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 575 TTTGTGCTGAACCGGATCCTCGGTTTGTGTTTCAATTTGGAGGTGAACCGGAATGTAGTC 634
Query 541 CTGTGGTTTACCAGATTCAAGATAATCTCAAACAGCCCGTCTTCAGCTGCAAATTCAGCT 600
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 635 CTGTGGTTTACCAGATTCAAGATAATCTCAAACAACCTGTCTTCAGCTGCAAATTCAGCT 694
Query 601 CCGATCGCAACGGAAGATCTCGGTCTCTACCATCAGGATTCACATATAGTAGTAGAGGAT 660
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 695 CCGATCGTAACGGAAGATCTCGGTCTCTACCATCAGGATTTACATATAGTAGTAGAGGAT 754
Query 661 GGATCACAAGAACATTATCAGGTGACCAATGGGAAAAGAAACAAGCGAGAGAACGTAAAG 720
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 755 GGATTACAAGAACATTATCAGGTGACCAGTGGGAAAAGAAACAAGCGAGAGAACGTAAAG 814
Query 721 GTTGGATGATAACGATCCATGATCTATCGGGATCACCAGTAGCAGCAGCTTCAATGATCA 780
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 815 GTTGGATGATAACGATCCATGATCTTTCGGGATCACCTGTAGCAGCAGCTTCAATGATCA 874
Query 781 CTCCTTTCGTGGCATCTCCAGGGTCTGATCGTGTTTCTAGATCAAACCCTGGTGCGTGGC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 CTCCTTTCGTGGCATCTCCAGGGTCTGATCGTGTTTCTAGATCAAACCCTGGTGCGTGGC 934
Query 841 TAATCCTTAGGCCTCATGGGACTTGTGTCAGTAGCTGGAAACCGTGGGGACGTCTTGAGG 900
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 935 TAATCCTTAGGCCTCATGGGACTTGTGTCAGTAGTTGGAAACCGTGGGGACGTCTTGAGG 994
Query 901 CTTGGCGTGAGAGAGGAGCTATTGATGGATTGGGTTACAAGTTCGAGCTCGTGAGGGATA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 CTTGGCGTGAGAGAGGAGCTATTGATGGATTGGGTTACAAGTTCGAGCTCGTGAGGGATA 1054
Query 961 ATAGTACTAGCACCGGCATTCCTATTGCAGAAGGGACAATGAGCACAAAACAAGGAGGAA 1020
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 ACAGTACTAGCACCGGCATTCCTATTGCAGAAGGGACAATGAGCACAAAACAAGGAGGAA 1114
Query 1021 AGTTCAGCATTGACAGGAGAGTCTCAGGCCAAGGTGAGTCGCCGGCAATATCATCACCGG 1080
||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||
Sbjct 1115 AGTTCAGCATTGACAGGAGAGTCTCAGGCCAGGGAGAGTCTCCGGCAATATCATCGCCGG 1174
Query 1081 TGAAAGGGTTCGTGATGGGTTCCAGCGTCGAAGGAGAAGGGAAAGTGAGCAAGCCTGTGG 1140
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1175 TGAAAGGGTTCGTGATGGGTTCGAGCGTCGAAGGAGAAGGGAAAGTGAGCAAGCCTGTGG 1234
Query 1141 TCCATGTGGGAGCACAGCACGTGACTTGCATGGCCGACGCAGCTCTCTTCGTCGCTCTCT 1200
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1235 TCCACGTGGGAGCACAGCATGTGACTTGCATGGCCGACGCAGCTCTCTTCGTTGCTCTCT 1294
Query 1201 CCGCAGCCGTTGATCTTAGCGTCGACGCGTGTCAGCTCTTCTCTCGTAAGCTTCGTAAAG 1260
| || ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 CTGCCGCCGTTGATCTAAGTGTCGACGCGTGTCAGCTCTTCTCTCGTAAGCTTCGTAAAG 1354
Query 1261 AGCTCTGTCACGACGACCAAAGCTCCCTCACGTGAAATTATGT-ATCTCA 1309
||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1355 AGCTCTGTCACGACGACCAAAGCTCCCTCACGTGAAAATATGTTATCTCA 1404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64808903595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5