BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945091
Length=622
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24480.1 | Symbols: | Beta-galactosidase related protein | ... 106 3e-22
> AT5G24480.1 | Symbols: | Beta-galactosidase related protein
| chr5:8363831-8365036 REVERSE LENGTH=1053
Length=1053
Score = 106 bits (57), Expect = 3e-22
Identities = 163/212 (77%), Gaps = 16/212 (8%)
Strand=Plus/Plus
Query 209 TTGAAGAAGAACGACATTATGATCCCGTCTCCAAGGAGCGGTGGTTACCGTTGCTTCTTC 268
||||||| || |||||||||||||||||||| |||||||| || |||||| |||||||
Sbjct 511 TTGAAGATGATCGACATTATGATCCCGTCTCTAAGGAGCGATGATTACCGAAGCTTCTTT 570
Query 269 AATCCGTTCTA-C-CC-ATTTC-TTCTGAATATTGATTTCAAAC--AAGTTTATATTATC 322
|| |||| | | || | ||| || || |||||| |||| | || || |||| |
Sbjct 571 AA-GTGTTC-ATCTCCGA-TTCATT-TGCTTATTGACTTCATCCTTGAG-ATA-ATTAGC 624
Query 323 -A-ACTTTATAGTTTGTATTCATGAAATTGGAAGCTTGAGGAAGAATGGCATTATGATCC 380
| || | | | || || ||||| | ||| |||| ||||||||||||||||||||
Sbjct 625 TACAC-CT-TGGGCACTACTCTTGAAAGTAAAAGTTTGATGAAGAATGGCATTATGATCC 682
Query 381 CGTCTCCAAGGAGCGGTGGTTACCAAAGCTTC 412
|||||||||||| |||||||||||||| ||||
Sbjct 683 CGTCTCCAAGGAACGGTGGTTACCAAATCTTC 714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29989785759
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5