BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945101
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29240.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1925 0.0
AT2G19780.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 900 0.0
> AT4G29240.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr4:14418605-14420250 FORWARD LENGTH=1646
Length=1646
Score = 1925 bits (1042), Expect = 0.0
Identities = 1211/1290 (94%), Gaps = 22/1290 (2%)
Strand=Plus/Plus
Query 2 CTACTTTGAAGGAGGAGAAAAATGTCTAAGAAGAAGAAAGGCAG---CAACTTTAAGCTT 58
|||||||| | |||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 205 CTACTTTG-A--AGGA-AAAAATGTCTAAGAAGAAGAAAGGCAGCAACAACTTTAAGCTT 260
Query 59 CTCTGTTTCTTCCTGTTTTTGACTGGTTTGATTCAGATAGATGCTTCTTTTGGAGTAGGA 118
||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||
Sbjct 261 CTCTGTTTCTTCCTGTTTTTGGGTGGTTTGGTTCAGACAGATGCTTCTTTTGGAGTAGGA 320
Query 119 GGCGGCGTTGGAGT-TG-AT----ATCGGCggtggtggcggtggtggtggtgTTTGGATT 172
|||||||||||||| | || |||||| ||||||||||| |||||||||||| ||
Sbjct 321 GGCGGCGTTGGAGTAGGAATCGGCGGCGGCGGCGGTGGCGGTGGCGGTGGTGTTTGGGTT 380
Query 173 GGCGGCGGATACAACAACGGCGGTAACCGTAATGCTGTTCCAGG---ATCAGCTCCAAAC 229
||||| |||||||||||||| || || ||||||||||||||||| |||||||||||||
Sbjct 381 GGCGGTGGATACAACAACGGTGGAAATCGTAATGCTGTTCCAGGATCATCAGCTCCAAAC 440
Query 230 AGAGTAGCTTACAATGCTCTTCAAGCTTGGAGATCAGCCATTACAGAGGATCCATCTAAT 289
|| |||||||||||||||||||||| ||||| ||||||||| | |||||||||||| |||
Sbjct 441 AGGGTAGCTTACAATGCTCTTCAAGTTTGGAAATCAGCCATGAGAGAGGATCCATCAAAT 500
Query 290 GTTCTTAAAACATGGGTTGGATCAGATGTTTGTTCTTACAAAGGTGTGTTCTGTTCTGGT 349
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 GTTCTCAAAACATGGGTTGGATCAGATGTTTGTTCTTACAAAGGTGTGTTCTGTTCTGGT 560
Query 350 CAATCTATAACCTCCATAGATCTTAACCATGCAAATCTCAAAGGCTCACTTGTCAAAGAC 409
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 561 CAATCTATAACCTCTATAGATCTTAACCATGCAAATCTCAAAGGCACACTTGTCAAAGAC 620
Query 410 CTAGCTTTACTCTCAGACCTCAATATTCTCCATCTCAACAGTAACAGATTCTCAGGGCAA 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 CTAGCTTTACTCTCAGACCTCAATATTCTCCATCTCAACAGTAACAGATTCTCAGGGCAA 680
Query 470 ATCCCAGATTCTTTCAAATCTTTAGCTTCTCTTCAAGAACTTGATCTAAGCAACAATAAA 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 ATCCCAGATTCTTTCAAATCTTTAGCTTCTCTTCAAGAACTTGATCTAAGCAACAATAAA 740
Query 530 CTCTCAGGTCCTTTCCCTTTAGTCACACTCTACATACCAAATCTGGTTTACCTCGATCTC 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CTCTCAGGTCCTTTCCCTTTAGTCACACTCTACATACCAAATCTGGTTTACCTCGATCTC 800
Query 590 CGGTTTAATAGTTTCTCCGGTTTCATCCCTGAAGAGCTTTTCAACAAACGGTTAGACGCA 649
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 CGGTTTAATAGTTTAACCGGTTTCATCCCTGAAGAGCTTTTCAACAAACGGTTAGACGCG 860
Query 650 ATTCTCCTCAATAACAACCAATTCGTCGGAGAAATCCCAAGAAACCTCGGAAATTCTCCG 709
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 ATTCTCCTCAATAACAATCAATTCGTCGGAGAAATCCCAAGAAACCTCGGAAATTCTCCG 920
Query 710 GCTTCTGTGATTAATCTGGCAAATAACAAATTTTCCGGCGAAATTCCGACGAGTTTTGGC 769
||||| || |||||||| || ||||||| ||||||||||||||||||||||||||||||
Sbjct 921 GCTTCGGTTATTAATCTCGCGAATAACAGATTTTCCGGCGAAATTCCGACGAGTTTTGGT 980
Query 770 CTCACGGGATCGAGGGTTAAGGAAGTTTTGCTTTTGAATAACCAGTTAACCGGTTGTATA 829
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 CTGACGGGATCGAGGGTTAAGGAAGTTTTGCTTTTGAATAACCAGTTAACCGGTTGTATA 1040
Query 830 CCGGAATCTGTTGGTATGTTCTCTGAAATTGAAGTCTTTGACGTTAGCTTCAATTCACTG 889
||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 1041 CCGGAATCTGTTGGTATGTTCTCTGAAATTGAAGTCTTTGACGTTAGCTACAATGCATTG 1100
Query 890 ATGGGTCATGTTCCAGATACGATCTCTTGCTTGTCGGCGATTGAAATTTTGAATCTTGCT 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 ATGGGTCATGTTCCAGATACGATCTCTTGCTTGTCGGCGATTGAAATTTTGAATCTTGCT 1160
Query 950 CACAACAAATTCTCCGGAGAGGTTCCTGATTTGGTTTGTTCGTTGAGGAAT-TTGATTAA 1008
||||| |||||||| || ||||||||||||||||||||||||||||||||| || |||||
Sbjct 1161 CACAATAAATTCTCTGGGGAGGTTCCTGATTTGGTTTGTTCGTTGAGGAATCTT-ATTAA 1219
Query 1009 TCTCACTGTTGCTTTCAACTTCTTCTCTGGGTTTAGCTCTGAATGTTCTTCCAGGATTAT 1068
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1220 TCTCACTGTTGCGTTCAATTTCTTCTCTGGGTTTAGCTCTGAATGTTCTTCCAGGGTTAG 1279
Query 1069 TTTCGGGTTCGATTTCGTCGGAAACTGTATTCCGGGGAGGAATTTGCAGCGGCCGCAGCC 1128
||||||||| |||||||| || || |||||||| |||||||||| |||||||||||||||
Sbjct 1280 TTTCGGGTTTGATTTCGTTGGGAATTGTATTCCCGGGAGGAATTCGCAGCGGCCGCAGCC 1339
Query 1129 GGATTGTTCGGGTTACTCCGGCGGAGCGATGAGCTGTTTTAGGATTCCGACGCAGCCTTT 1188
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1340 GGATTGTTCCGGTTATTCCGGCGGAGCTATGAGCTGTTTTAGGATTCCGACGCAGCCTTT 1399
Query 1189 GGCTTGTGCTGCGATAAGTGTTGGATTGAGAGAGGGTAACAATCAGTACTACACTTC-T- 1246
|||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| |
Sbjct 1400 GGCTTGTGCTGCGATAAGTGTTGGATTGAGAGAGAGTAATAATCAATACTACACTTCATC 1459
Query 1247 TC-TCCATGAAAGTTTTTTAAAGTTAGAAG 1275
|| ||||||||||||| | |||||||||||
Sbjct 1460 TCCTCCATGAAAGTTTCT-AAAGTTAGAAG 1488
> AT2G19780.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr2:8522678-8525093 REVERSE LENGTH=1945
Length=1945
Score = 900 bits (487), Expect = 0.0
Identities = 824/984 (84%), Gaps = 33/984 (3%)
Strand=Plus/Plus
Query 235 AGCTTACAATGCTCTTCAAGCTTGGAGATCAGCCATTACAGAGGATCCATCTAATGTTCT 294
||||||||||||||||||| |||||| ||| ||||||||||||||||||||| ||||||
Sbjct 793 AGCTTACAATGCTCTTCAATCTTGGAAATCCGCCATTACAGAGGATCCATCTGGTGTTCT 852
Query 295 TAAAACATGGGTTGGAT-CAGATGTTTGTTCTTACAAAGGTGTGTTCTGTTCTGG-TCAA 352
||||||||||||||| | ||||||||||||||||| ||| |||||||||||||| || |
Sbjct 853 TAAAACATGGGTTGG-TGAAGATGTTTGTTCTTACAGAGGCGTGTTCTGTTCTGGCTC-A 910
Query 353 TCTATAACCTCCATAGATCTTAACCATGCAAATCTCAAAGGC-TCACTTGTCAAAGACCT 411
|||||||||||||||||||| ||| | ||||||||||||||| || |||| ||||||||
Sbjct 911 TCTATAACCTCCATAGATCTAAACAAAGCAAATCTCAAAGGCACCA-TTGTTAAAGACCT 969
Query 412 AGCTTTACTCTCAGACCTCAA-TATTCTCCATCTCAACAGTAACAGATTCTCAGGGCAAA 470
|||||||||||||||| || ||||| ||||||||||||||||||||||| || ||||
Sbjct 970 CTCTTTACTCTCAGACCT-AACCATTCTTCATCTCAACAGTAACAGATTCTCTGGTCAAA 1028
Query 471 TCCCAGATTCTTTC-A-AATCTTTAGCTTCTCTTCAAGAACTTGATCTAAGCAACAATAA 528
|||||||||||||| | |||| || | ||||||||||||||| ||||| |||||||| |
Sbjct 1029 TCCCAGATTCTTTCAAGAATC-TT-GATTCTCTTCAAGAACTCGATCTCAGCAACAACAG 1086
Query 529 ACTCTCAGGTCCTTTCCCTTTAGTCACACTCTACATACCAAATCTGGTTTACCTCGATCT 588
| |||| ||| |||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1087 ATTCTCCGGTTCTTTCCCTCAAGTCACACTCTACATCCCAAATCTGGTTTACCTCGATCT 1146
Query 589 CCGGTTTAATAGTTTCTCCGGTTTC-ATCCCTGAAGAGCTTTTCAACAAACGGTTAGACG 647
|||||| || | |||| | || || || || ||| | || |||||||||| |||||||
Sbjct 1147 CCGGTTCAACAATTTCACTGG-CTCTATACCGGAAAATCTCTTCAACAAACAATTAGACG 1205
Query 648 CAATTCTCCTCAATAACAACCAATTCGTCGGAGAAATCCCAAGAAACCTCGGAAATTCTC 707
| ||||||||||| ||||| |||||| |||||||||||| | || ||||| | |||
Sbjct 1206 CGATTCTCCTCAACAACAATCAATTCACCGGAGAAATCCCTGGGAATCTCGGTTACTCTA 1265
Query 708 CGGCTTCTGTGATTAATCTGGCAAATAACAAATTTTCCGGCGAAATTCCGACGAGTTTTG 767
| ||||| ||||||||||| || || |||||||| ||||||||||| ||||||||||| |
Sbjct 1266 CAGCTTCGGTGATTAATCTCGCTAACAACAAATTATCCGGCGAAATCCCGACGAGTTTCG 1325
Query 768 GCCTCACGGGATCGAGGGTT-AAGGAAGTTTTGCTT-TTGAATAACCAGTTAACCGGTTG 825
| |||| || |||| || || || |||||| || |||||||||||||||||||||||
Sbjct 1326 GTATCACCGGTTCGA-AATTGAAAGAGGTTTTG-TTCTTGAATAACCAGTTAACCGGTTG 1383
Query 826 TATACCGGAATCTGTTGGTATGTTCTCTGAAATTGAAGTCTTTGACGTTAGCTTCAATTC 885
|||||||||||| |||||| | ||||| || |||||||| ||||| ||||| ||||||||
Sbjct 1384 TATACCGGAATCAGTTGGTTTATTCTCCGACATTGAAGTGTTTGATGTTAGTTTCAATTC 1443
Query 886 ACTGATGGGTCATGTTCCAGATACGATCTCTTGCTTGTCGGCGATTGAAATTTTGAATCT 945
| ||||||||||||| || || |||||||||||||| |||| ||||||| ||||||||||
Sbjct 1444 ATTGATGGGTCATGTCCCTGACACGATCTCTTGCTTATCGGAGATTGAAGTTTTGAATCT 1503
Query 946 TGCTCACAACAAATTCTCCGGAGAGGTTCCTGATTTGGTTTGTTCGTTGAGGAATTTGAT 1005
| ||||||||||||||||| || ||||||||||||| ||| | ||||||||| ||||
Sbjct 1504 CGGACACAACAAATTCTCCGGTGATCTTCCTGATTTGGTCTGTACTTTGAGGAATCTGAT 1563
Query 1006 TAATCTCACTGTTGCTTTCAACTTCTTCTCTGGGTTTAGCTCTGAATGTTCTTCCAGGAT 1065
||||| || ||| ||||||||||||||||||||||||||||| | || || | || |
Sbjct 1564 AAATCTGACGGTTTCTTTCAACTTCTTCTCTGGGTTTAGCTCTCAGTG--CT-CGAGCCT 1620
Query 1066 TATT-TTCGGGTTCGATTTCGTCGGAAACTGTATTCCGGGGA-GGAATT-TGCAGCGGCC 1122
|| || ||||| |||||| |||||| |||||||| || | || || | || |||||
Sbjct 1621 TAGCGTT-GGGTTTGATTTCACCGGAAATTGTATTCCCGGTAAGGG-TTAT-CAACGGCC 1677
Query 1123 GCAGCCGGATTGTTCGG-G-TTACTCCGGCGGAGCGAT-GAGCTGTTTTAGGATTCCGAC 1179
|||||||||||||||| | || || || || | || |||||||||||| |||||| |
Sbjct 1678 TCAGCCGGATTGTTCGGCGATTCCT--GGTGGC-CAATTGAGCTGTTTTAGAATTCCGGC 1734
Query 1180 GCAGCCTTTGGCTTGTGCTGCGAT 1203
|||||| || | |||||||||||
Sbjct 1735 GCAGCCGTTAACGTGTGCTGCGAT 1758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62700480705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5