BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945103
Length=1459
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29220.1 | Symbols: PFK1 | phosphofructokinase 1 | chr4:1440... 2370 0.0
> AT4G29220.1 | Symbols: PFK1 | phosphofructokinase 1 | chr4:14403347-14406592
REVERSE LENGTH=2068
Length=2068
Score = 2370 bits (1283), Expect = 0.0
Identities = 1404/1463 (96%), Gaps = 5/1463 (0%)
Strand=Plus/Plus
Query 1 AGTCTCCGACAAGGTTGGTTATGTCATCTTCTGTCCCAAACTCGGACCGGAAGATTGTTA 60
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 353 AGTCTCCGAAAAGGTTGGTTATGTCATCTTCTGTTCCAAACTCGGACCGGAAGATTGTTA 412
Query 61 CTGGTCCCGCAGGTTATATTCTTGAAGACGTTCCTCATTTCACCGACGACTTCCCTGATC 120
|||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 413 CTGGTCCCGCCGGTTATATTCTTGAAGACGTTCCTCATTTCTCCGACGACTTTCCTGATC 472
Query 121 ACCCTACATATCCAAATCCATTACAAGACAACGCAGCTTACTCTGTTGTTAGGCAGTATT 180
| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 473 ATCCTACATATCCAAATCCATTACAAGACAATGCAGCTTACTCTGTTGTTAAGCAGTATT 532
Query 181 TCGTCGATGAGGATGACACGGTTCCTCAAAAGATAGTAGTTCATCCTGATAGTCCTAGGG 240
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 533 TTGTCGATGAGGATGACACGGTTCCTCAAAAAATAGTAGTTCATCCTGATAGTCCTAGGG 592
Query 241 GAACACATTTCCGTCGTGCAGGACCACGTCAAAGGGTTTACTTTGAGTCGGATGATGTTC 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GAACGCATTTCCGTCGTGCAGGACCACGTCAAAGGGTTTACTTTGAGTCGGATGATGTTC 652
Query 301 TTGCGTGCATTGTTACGTGTGGCGGTTTGTGTCCCGGGCTTAATACTGTGATCAGAGAGA 360
|||| ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct 653 TTGCTTGCATTGTTACATGTGGCGGTCTATGTCCCGGGCTTAATACTGTGATCAGAGAGA 712
Query 361 TAGTTTGTGGTTTATCTTACATGTATGGTGTCAAGAGAATCCTTGGAATTGATGGAGGTT 420
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 713 TAGTTTGTGGATTATCTTATATGTATGGTGTCAAGAGAATCCTTGGCATTGATGGAGGTT 772
Query 421 ACAGAGGATTTTACGCGAGAAACACAATCCATTTGGACTTAAAAACAGTGAATGATATTC 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 773 ACAGAGGATTTTACGCGAGAAACACAATCCATTTGGACTTAAAAACAGTGAATGATATCC 832
Query 481 ATAGAAGCGGAGGAACTATCCTCGGGACGTCAAGAGGCGGTCACGACACCACCAAGATAG 540
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 833 ATAGAAGCGGAGGAACTATCCTCGGGACTTCAAGAGGCGGTCACAACACCACCAAGATAG 892
Query 541 TAGATAGTATTCAAGATCGTGGGATTAACCAGGTTTATATAATCGGTGGAGATGGATCAC 600
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TAGATAGTATTCAAGATCGCGGGATTAACCAGGTTTATATAATCGGTGGAGATGGATCAC 952
Query 601 AGAAAGGAGCTGCTGCTATATTCAAGGAGGTTAGGAAACG-AGGGCTTAAAGTTGCGGTT 659
|||||||||| |||||||||||| ||||| |||||||||| | ||||||||||||||||
Sbjct 953 AGAAAGGAGCAGCTGCTATATTCGAGGAGATTAGGAAACGCA-AGCTTAAAGTTGCGGTT 1011
Query 660 GCCGGAATCCCGAAAACAATCGACAATGATATTCCTATTATCGATAGATCTTTTGGATTT 719
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||
Sbjct 1012 GCCGGAATCCCGAAAACAATTGACAATGACATTCCTATTATCGATAGATCTTTCGGGTTT 1071
Query 720 GACACAGCTGTAGAAGAGGCTCAACGTGCTATCAATGCAGCCCATGTCGAAGCTACAAGC 779
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1072 GACACAGCTGTAGAAGAGGCTCAACGTGCTATCAATGCAGCACATGTCGAAGCTACAAGC 1131
Query 780 TTTGAGAATGGTATTGGTCTTGTGAAGTTAATGGGACGGTACAGCGGATTCATTGCAATG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 TTTGAGAATGGTATTGGTCTTGTGAAGTTAATGGGACGGTACAGCGGATTCATTGCAATG 1191
Query 840 TATGCAACTCTAGCCAGCCGAGATGTGGACTGTTGCTTGATCCCGGAATCACCATTTTTT 899
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1192 CATGCCACTCTAGCCAGCCGAGATGTGGACTGTTGCTTGATCCCGGAATCTCCATTTTTT 1251
Query 900 CTTGAAGGCCCGGGCGGGCTTTTTGAATTTATTGATAAACGGCTAAAGGAGAGTGGTCAC 959
||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1252 CTTGAAGGCTCGGGCGGGCTTTTTGAATTTATCGATAAACGGTTAAAGGAGAGTGGTCAT 1311
Query 960 ATGGTGATTGTAATTGCAGAAGGCGCGGGACAAGATCTGTTGGCTGAAAGCATGGAAGAG 1019
||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||
Sbjct 1312 ATGGTGATTGTAATTGCAGAAGGTGCGGGACAAGATCTGTTGTCTGAAAGCATGAAAGAG 1371
Query 1020 TCCACAATTCTGAAAGATGCCTCTGGAAACAAACTTCTACAAGACATTGGCCTGTGGATC 1079
||||||| ||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1372 TCCACAACTCTCAAAGATGCCTCTGGAAACAAACTTCTTCAAGACATTGGCCTATGGATC 1431
Query 1080 TCCCAAAGGATCAAGGATCATTTTGCCAAGAAGATGACCCTTACCCTCAAATATATAGAT 1139
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 TCCCAAAGAATCAAGGATCATTTTGCCAAGAAGATGACCCTTACCCTCAAATATATAGAT 1491
Query 1140 CCAACCTACATGATACGGGCTATTCCGAGCAATGCATCAGACAATGTATGCTGCACACTA 1199
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1492 CCAACCTACATGATACGAGCTGTTCCGAGCAATGCATCAGACAATGTATGCTGCACGCTT 1551
Query 1200 TTAGCTCAAAGCGCCGTTCATGGAGTGATGGCTGGTTACAATGGTTTCACTGTTGGCCTT 1259
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 TTAGCTCAAAGCGCGGTTCATGGAGTGATGGCTGGTTACAATGGTTTCACTGTTGGCCTT 1611
Query 1260 GTCAATGGAAGACATACTTACATTCCCTTTTATAGGATCACGGAGAAACAGAACAAGGTG 1319
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1612 GTCAATGGAAGACATACTTACATTCCCTTCAATAGGATCACGGAGAAACAGAACAAGGTG 1671
Query 1320 GTGATCACTGACAGAATGTGGGCGAGGCTTTTGTCTTCGACGAACCAACCGAGTTTCATG 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 GTGATCACTGACAGAATGTGGGCGAGGCTTTTGTCTTCGACGAACCAACCGAGTTTCATG 1731
Query 1380 AAGCA-G--GACAAGATCCACTCAAACCAGTTGGTTGGTGAACCAGGGACCATGAAATGG 1436
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 AAGCAAGCTGACAAGATCCACTCAAACCAGTTGGTTGGTGAACCAGGGACCATGAAATGG 1791
Query 1437 TGATCAAGACTGTCTACAAAAAC 1459
||||||| |||||||||||||||
Sbjct 1792 TGATCAACACTGTCTACAAAAAC 1814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71937380985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5