BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945110
Length=1643
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29140.1 | Symbols: | MATE efflux family protein | chr4:143... 2695 0.0
> AT4G29140.1 | Symbols: | MATE efflux family protein | chr4:14368919-14370892
FORWARD LENGTH=1974
Length=1974
Score = 2695 bits (1459), Expect = 0.0
Identities = 1582/1640 (96%), Gaps = 13/1640 (1%)
Strand=Plus/Plus
Query 5 CATCACCATCACCGTCATGTGTAACCCAT---CAACAACAACAACCACCGGTTCAGAGAA 61
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 214 CATCATCATCACCGTCATGTGTAACCCATCAACAACAACAACAACCACCGGTTCAGAGAA 273
Query 62 CCAAGAATCTCGAACCGGAATCTTCCTCGATCTCTTCTCGATCAATAGCTTTGAACCCAC 121
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 274 CCAAGAATCTCGAACCGGACTCTTCCTCGATCTCTTCTCGATCAATAGCTTTGAACCCAC 333
Query 122 AAAGAGAAATCTCCGGCATTGCGAGAACAGAGGATCTCCTCTTATGGCAGAAGCTGTAAC 181
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 334 AAAGAGAAATCTCCGGCATTGTGAGAACAGAGGATCTCCTCTTATGGCAGAAGCTGTAAC 393
Query 182 AGAGGCGAAATCTCTCTTCACGCTAGCTTTTCCGATCGCCGTGACGGCTCTAGTCCTCTA 241
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 394 AGAGGCGAAATCTCTCTTCACGTTAGCTTTTCCGATCGCCGTGACGGCTCTTGTCCTCTA 453
Query 242 CCTACGCTCCGCCGTATCAATGTTTTTCTTGGGTCGACTAGGTGACCTCGAATTAGCCGC 301
||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 454 CCTACGCTCAGCCGTATCAATGTTTTTCTTGGGTCAACTTGGTGACCTCGAATTAGCCGC 513
Query 302 CGGTTCACTCGCCATTGCCTTTGCTAACATAACCGGTTACTCTGTTTTATCCGGTTTAGC 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 CGGTTCACTCGCCATTGCCTTTGCTAACATAACCGGTTACTCTGTTTTATCCGGTTTAGC 573
Query 362 ACTTGGTATGGAACCACTCTGTTCTCAAGCCTTCGGTGCTCACCGCTTCAAACTCCTCTC 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 574 TCTTGGTATGGAACCACTCTGTTCTCAAGCCTTCGGTGCTCACCGCTTCAAACTCCTTTC 633
Query 422 CCTAACCCTCCATCGAACCGTGGTTTTTCTCTTGGTTTGTTGCGTACCGATCTCGGTTCT 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 CCTAACCCTCCATCGAACCGTGGTTTTTCTCTTGGTTTGTTGCGTACCGATCTCGGTTCT 693
Query 482 CTGGTTAAACGTCGGCAAAATCTCGGTTTACCTTCACCAAGACCCCGACATCGCTAAATT 541
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 694 CTGGTTTAACGTCGGCAAAATATCGGTTTACCTTCACCAAGACCCCGACATCGCGAAATT 753
Query 542 AGCTCAGACATATCTCATCTTCTCCCTCCCTGATCTTCTCACCAACACTCTTCTCCATCC 601
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 754 AGCTCAGACATATCTCATCTTCTCCCTACCTGATCTTCTCACCAACACTCTTCTTCATCC 813
Query 602 AATCAGAATCTACCTTCGTGCTCAAGGCATCATTCACCCCGTAACCCTAGCTTCTCTCTC 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 AATCAGAATCTACCTTCGTGCTCAAGGCATCATTCACCCCGTAACCCTAGCTTCTCTCTC 873
Query 662 CGGCGCTGTTTTTCACCTCCCGGCTAATCTTTTCTTAGTCTCTTACCTCCGTCTTGGTCT 721
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 874 CGGCGCTGTTTTTCACCTCCCGGCTAATCTTTTCTTAGTCTCTTACCTCCGTCTTGGTTT 933
Query 722 AACCGGCGTAGCAGTCGCTTCCTCTATCACAAACATCTTCGTCGTAGCTTTCCTCGTTTG 781
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 934 AACCGGCGTAGCAGTCGCTTCCTCCATCACAAACATCTTCGTCGTTGCTTTCCTCGTTTG 993
Query 782 CTACGTCTGGGCGAGTGGTCTCCACGCGCCTACATGGACTGACCCGACCCGTGATTGTTT 841
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 994 CTACGTCTGGGCGAGTGGTCTTCACGCGCCTACATGGACTGACCCGACCCGTGATTGTTT 1053
Query 842 CCGCGGGTGGGCTCCGTTGCTGCGTCTCGCGGGTCCGAGCTGTGTCTCCGTGTGTTTGGA 901
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1054 CCGCGGGTGGGCTCCGTTGCTGCGTCTCGCGGGACCAAGCTGTGTCTCCGTGTGTTTGGA 1113
Query 902 GTGGTGGTGGTACGAGATCATGATCGTTTTGTGTGGTTTGCTCGTGAATCCAAGATCGAC 961
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 ATGGTGGTGGTACGAGATCATGATCGTTTTGTGTGGTTTGCTCGTGAATCCAAGATCGAC 1173
Query 962 GGTGGCTGCTATGGGTGTTTTGATCCAGACGACGTCGTTTCTTTACGTTTTCCCGTCTTC 1021
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1174 GGTGGCTGCTATGGGCGTTTTGATCCAGACGACGTCGTTTCTTTATGTTTTCCCGTCTTC 1233
Query 1022 TCTTAGCTTTGCTGTCTCAACTAGAGTCGGGAACGAGCTTGGAGCGAACCGTCCCAAGAC 1081
|||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 1234 TCTTAGCTTTGCTGTCTCAACTAGAGTCGGAAACGAACTTGGAGCCAACCGTCCCAAGAC 1293
Query 1082 GGCGAAGCTAACAGCCACGGTGGCTATCGTTTTCGCGGCGGTCACAGGGATTACAGCGGC 1141
|| |||||||| || |||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1294 AGCAAAGCTAACGGCTACGGTGGCTATCGTTTTCGCGGCGGTTACAGGGATTATAGCGGC 1353
Query 1142 GGCGTTTGCTTACTCAGTCAGAAACGCTTGGGGGAGGATATTT-ACCGGAGACAAAGAGA 1200
||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||
Sbjct 1354 GGCGTTTGCTTACTCAGTCAGAAACGCTTGGGGAAGGAT-TTTCACCGGAGACAAAGAGA 1412
Query 1201 TACTCCAGCTAACAGCGGCGGCGTTACCGATATTGGGTTTATGCGAGATCGGAAACTGTC 1260
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1413 TACTCCAGCTAACAGCGGCGGCGTTACCGATATTAGGTCTATGCGAGATCGGAAACTGTC 1472
Query 1261 CTCAGACGGTGGGATGCGGAGTCGTGAGAGGAACAGCACGGCCGTCAACGGCGGCGAACG 1320
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1473 CTCAGACGGTGGGATGCGGCGTCGTGAGAGGAACAGCACGACCGTCAACGGCGGCGAACG 1532
Query 1321 TGAAC-TTGGGAGCGTTTTATCTGGTGGGCATGCCGGTCGCAGTGGGTCTCGGGTTTTGG 1379
||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1533 TGAACCTTGG-AGCGTTTTATCTGGTGGGCATGCCGGTGGCAGTGGGTCTCGGGTTTTGG 1591
Query 1380 GCCGGAATTGGGTTTACTGGGCTTTGGGTAGGACTACTTGCGGCGCAGATTAGCTGCGCA 1439
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1592 GCCGGAATTGGGTTTAATGGGCTTTGGGTAGGACTACTTGCGGCGCAGATTAGCTGCGCA 1651
Query 1440 GGTCTTATGATGTACGTTGTGGGGACCACAGATTGGGAATCGGAGGCTAAGAAGGCGCAG 1499
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1652 GGTCTTATGATGTACGTGGTGGGGACCACAGATTGGGAATCGGAGGCTAAGAAGGCGCAG 1711
Query 1500 ACGCTAACGTGCGCCGAGACTGTAGAGAATGATATTATTAAGGCGGTGGTGGCGAACACT 1559
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1712 ACGCTAACGTGCGCTGAGACTGTAGAGAATGATATTATTAAGGCGGTGGTGGCGAGTACT 1771
Query 1560 ATAGGTGACGACGGTGAGTGCGATGAGGCTGAGCCGTTGATTCGCATCACGGTGCTTTAT 1619
|||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1772 ATAG---ACG--G-TGAGTGCGATGAGGCTGAGCCGTTGATTCGCATCACGGTGCTTTAT 1825
Query 1620 TAATATTAATTAAGATAAAA 1639
||||||||||||||| ||||
Sbjct 1826 TAATATTAATTAAGACAAAA 1845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81174281265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5