BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945115
Length=1268
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29100.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 2189 0.0
> AT4G29100.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14341000-14344930 FORWARD
LENGTH=1719
Length=1719
Score = 2189 bits (1185), Expect = 0.0
Identities = 1243/1271 (98%), Gaps = 3/1271 (0%)
Strand=Plus/Plus
Query 1 agagagagagagtagagaAAAAAGGTGATGAATAGAGGTGTGTTGGAGAGTTCGCCGGTT 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 114 AGAGAGAGAGAGTAGAGATAAAAGGTGATGAATAGAGGTGTGTTGGAGAGTTCGCCGGTT 173
Query 61 CAACAGCTGATGGCAGCCGGAAACCCTAACTGGTGGAACGTAAGCGGCGGCATGAGGCCA 120
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 174 CAGCAGCTGATGGCAGCCGGAAACCCTAATTGGTGGAACGTAAGCGGCGGCATGAGGCCA 233
Query 121 CCCCCACCGTTGATGGGTCATCAGCAAGCGCCGTTGCCACCACATATGACTCCTAACAAC 180
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 234 CCACCACCGTTGATGGGTCATCAGCAGGCGCCGTTGCCACCACATATGACTCCTAATAAC 293
Query 181 AATTATCTCCGACCACGGATGATGCCCACTCCCTTGCCGCACTTCTTACCATCTCCGGCG 240
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 294 AATTATCTCCGACCACGGATGATGCCCACTCCCTTCCCGCACTTCTTGCCATCTCCGGCG 353
Query 241 A---CTTCGTCTTCCTCTTCTTCTTCACCGTCTTTGCCTAATAACCCTAATCTCTCTTCT 297
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 ACTTCTTCTTCTTCCTCTTCTTCTTCACCGTCTTTGCCTAATAACCCTAATCTCTCTTCT 413
Query 298 TGGCTTGAAAGCAATGATCTCCCTCCTGAGTCTTGGAGCCTTAGCCAACTTCTTTTGGGT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TGGCTTGAAAGCAATGATCTCCCTCCTGAGTCTTGGAGCCTTAGCCAACTTCTTTTGGGT 473
Query 358 GGATTGATGATGGGGGAGGAAGAGAGATTGGAGATGATGAACCATCATAATCATCATGAT 417
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GGATTGATGATGGGAGAGGAAGAGAGATTGGAGATGATGAACCATCATAATCATCATGAT 533
Query 418 GAACAACAACACCATAGTTTTCAAGGGAAGATGCGATTGGAGAATTGGGAAGAACAAGTG 477
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 534 GAACAACAACACCATGGTTTTCAAGGGAAGATAAGATTGGAGAATTGGGAAGAACAAGTG 593
Query 478 TTAAGCCGCCAACAAGCTTCCATGGTGGCTGTTGACATCAAACAAGAGAGTAACATTAAC 537
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 594 TTAAGCCACCAACAAGCTTCCATGGTGGCTGTTGACATCAAACAAGAGGGTAACATTAAC 653
Query 538 AACAACAATGGCTATGTCATATCTTCTCCGAACTCACCTCCTAACAAATCTTGTGTTaca 597
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 654 AACAACAATGGCTATGTCATATCTTCCCCGAACTCACCTCCTAACAAATCTTGTGTTACA 713
Query 598 acaacaaccacaacaagcctcaatagtaacgacgataacatcaacaacaataataataTG 657
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 ACAACTACCACAACAAGCCTCAATAGTAACGACGATAACATCAACAACAATAATAATATG 773
Query 658 TTGGATTTCTCCAGCAATCACAATGGTCTTCACTTGTCAGAAGGGAGACACACTCCTCCG 717
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TTGGATTTCTCTAGCAATCACAATGGTCTTCACTTGTCAGAAGGGAGACACACTCCTCCG 833
Query 718 GATCGATCCTCTGAGTGTAACAGCTTAGAGATTGGTGGGTCTACTAATAAGAAGCCAAGG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GATCGATCCTCTGAGTGTAACAGCTTAGAGATTGGTGGGTCTACTAATAAGAAGCCAAGG 893
Query 778 CTCCAACCTTCTCCTTCGTCACAATCAACCCTCAAGGTGAGAAAGGAGAAACTAGGAGGC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 CTCCAACCTTCTCCTTCGTCACAATCAACCCTCAAGGTGAGAAAGGAGAAACTAGGAGGC 953
Query 838 CGAATCGCAGCGCTTCATCAGCTAGTATCTCCATTTGGAAAGACTGACACAGCATCTGTC 897
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 954 CGAATCGCAGCGCTTCATCAGCTAGTATCTCCATTTGGAAAGACTGACACAGCCTCTGTC 1013
Query 898 CTGTCGGAAGCTATTGGATACATTAGATTCCTTCAGAGTCAAATTGAGGCTCTGAGTCAT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CTGTCGGAAGCTATTGGATACATTAGATTCCTTCAGAGTCAAATTGAGGCTCTGAGTCAT 1073
Query 958 CCATACTTTGGTACGACTGCCTCGGGGAATTTGAGGCACCAACAACATTTGCAAGGAGAT 1017
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1074 CCATACTTTGGTACGACTGCCTCGGGGAATATGAGGCACCAACAACATTTGCAAGGAGAT 1133
Query 1018 AGGAGTTGCATATTTCCTGAGGACCCTGGCCAGCTCGTGAATGATCAGTGCATGAAGAGA 1077
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1134 AGGAGTTGCATATTTCCTGAGGACCCTGGTCAGCTCGTGAACGATCAGTGCATGAAGAGA 1193
Query 1078 AGAGGAGCTTCTTCGTCATCTACGGACAATCAAAATGCAAGTGAAGAGCCTAAGAAAGAT 1137
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 AGAGGAGCTTCGTCGTCATCTACGGACAATCAAAATGCAAGTGAAGAGCCTAAGAAAGAT 1253
Query 1138 CTGAGAAGTCGAGGTTTATGTCTTGTCCCAATCTCATGCACACTCCAAGTAGGCAGCGAC 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 CTGAGAAGTCGAGGTTTATGTCTTGTCCCAATCTCATGCACACTCCAAGTAGGCAGCGAC 1313
Query 1198 AACGGCGCCGACTATTGGGCTCCAGCACTCGGCTCCGCCGGTTTCCATTGAGCCAATGAA 1257
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1314 AACGGCGCGGACTATTGGGCTCCAGCACTTGGCTCCGCCGGTTTCCATTGAGCCAATGAA 1373
Query 1258 ATTACGCCACG 1268
|||||||||||
Sbjct 1374 ATTACGCCACG 1384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62349076890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5