BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945123

Length=442
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G29030.1 | Symbols:  | Putative membrane lipoprotein | chr4:...   717    0.0  


> AT4G29030.1 | Symbols:  | Putative membrane lipoprotein | chr4:14307249-14307973 
FORWARD LENGTH=725
Length=725

 Score =  717 bits (388),  Expect = 0.0
 Identities = 426/444 (96%), Gaps = 4/444 (1%)
 Strand=Plus/Plus

Query  1    AGGCAACAAACATAATCAACTTAAATCTTATCTACTTTCTATTTCTTTTTAAATCAAAAT  60
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  7    AGGCAACAAACATAATCAACTTAAATCTTATCTACTTTCTATTTCTTTTT-AATCAAAAT  65

Query  61   TACCGTTCTTGACTATGGCGAAGTGGTTTTTCACTATCTTCTTGGCTTTTGCCCTAGCAT  120
            |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct  66   TACCGTTCTTAACTATGGCGAAGTGGTTTTTCACTATCTTCTTGGTTTTTGCCCTAGCCT  125

Query  121  CAGCTTTAGCTTGTGGTGCAAGAAACGTCCCAGTAGGCCTCTCTGACCAGAAGAACTACC  180
            |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct  126  CAGCTTTAGCTTGTGGCGCAAGAAACGTCCCAGTAGGCCTCTCTGACCAAAAGAACTACC  185

Query  181  TCGGATATGGTGGCGGATATTCCGGCGTTGGAGACAATGGTTTACCATTCGGTGGTGTCG  240
            |||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct  186  TCGGATATGGTGGCGGATATTCCGGCGTTGGAGACAATGGTTTACCCTTTGGTGGCGTCG  245

Query  241  GTGGAGGTGTATCTGGTCCCGGAGGTAATCTTGGTTATGGGGGATTTGGCGGT-CTTGGT  299
            |||||||||| |||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct  246  GTGGAGGTGTGTCTGGTCCCGGAGGTAATCTTGGTTATGGGGGATTTGGTGGTGCT-GGT  304

Query  300  GGGGGCTTAGGAGGTGGTTTGGGCGGTGGAGTAGGCAGTGGATTAGGCGGTGGCTTAGGT  359
            || |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  305  GGCGGCTTAGGCGGTGGTTTGGGCGGTGGAGCAGGCAGTGGATTAGGCGGTGGCTTAGGT  364

Query  360  GGTGGAAGTGGAATTGGTGCCGGAACCGGTGGAGGAAGTACCGGAGGAGTTCATTTCCCT  419
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  365  GGTGGAAGTGGAATTGGTGCCGGAACCAGTGGAGGAAGTACCGGAGGAGTTCATTTCCCT  424

Query  420  TGAGTTGTTACTTTGGTTTT-AAG  442
            |||||||||||||||||||| |||
Sbjct  425  TGAGTTGTTACTTTGGTTTTTAAG  448



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21011919082


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5