BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945124

Length=367
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G29020.1 | Symbols:  | glycine-rich protein | chr4:14304921-...   372    1e-102


> AT4G29020.1 | Symbols:  | glycine-rich protein | chr4:14304921-14305721 
FORWARD LENGTH=801
Length=801

 Score =  372 bits (201),  Expect = 1e-102
 Identities = 211/216 (98%), Gaps = 0/216 (0%)
 Strand=Plus/Plus

Query  152  ggtcttggcggtggtgtaggtggtcttggcggtgtaggtggtctaggtggtggttcaggt  211
            ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  370  GGTCTAGGCGGTGGTGTAGGTGGTCTTGGCGGTCTAGGTGGTCTAGGTGGTGGTTCAGGT  429

Query  212  cttggtcatggagtaggtggaattggtggtgACCCTGGTATTGGTAGTGGTATCGGTGGA  271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  430  CTTGGTCATGGAGTAGGTGGAATTGGTGGTGACCCTGGTATTGGTAGTGGTATCGGTGGA  489

Query  272  CTAGGCGGTGCAGGTGGTCTAGGCGGTATAGGCGGTGTTGGTGGTTTGGGTGGAGTTGGC  331
            || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  490  CTCGGCGGTGCAGGTGGTCTAGGCGGTATAGGCGGTGTTGGTGGTTTGGGTGGAATTGGC  549

Query  332  GGTGGAAGCGATTGCGGTGGCGTAATTCCACACCAT  367
            ||||||||||||||||||||||||||||| ||||||
Sbjct  550  GGTGGAAGCGATTGCGGTGGCGTAATTCCTCACCAT  585


 Score =  185 bits (100),  Expect = 2e-46
 Identities = 129/142 (91%), Gaps = 5/142 (4%)
 Strand=Plus/Plus

Query  11   AAGAGAAGAGATGGCAATTAGGTGTTTATCCGTGTTCCTCGTTGCCT-TCATGGTGGCTC  69
            ||| |||||||||||| ||||||||||| ||||||||||||||| || |||||||| |||
Sbjct  103  AAG-GAAGAGATGGCAGTTAGGTGTTTAGCCGTGTTCCTCGTTG-CTCTCATGGTGTCTC  160

Query  70   AAGCAGTCACCGCAACAAGACCGATTCCAGCCAAGAATGTCGGAGCTGGTCTTGACGACC  129
            |||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||
Sbjct  161  AAGCAGTCACCGCAACAAGACCGGCTCCAACCAAGAATGTCGGAGCTGGTCTTGACGACC  220

Query  130  AAAAGA-CGTTTGGGGCGTTCG  150
            |||||| | ||||  |||||||
Sbjct  221  AAAAGAAC-TTTGTAGCGTTCG  241



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17241837907


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5