BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945127
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28990.2 | Symbols: | RNA-binding protein-related | chr4:14... 1277 0.0
> AT4G28990.2 | Symbols: | RNA-binding protein-related | chr4:14291151-14293174
FORWARD LENGTH=1398
Length=1398
Score = 1277 bits (691), Expect = 0.0
Identities = 829/892 (93%), Gaps = 23/892 (3%)
Strand=Plus/Plus
Query 222 CATAGAACTCGGGCAAGTTCTAGCTCACCAGGCCGTCGTGGATATGAAGATCAC-CGTCA 280
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 391 CATAGAACTCGGGCAAGTTCTAGCTCACCAGGCCGTCGTGGATATGAAGATCACAAG-CA 449
Query 281 TGGCTCTGATCTTAATCATTCAGGCATTAAACCTCGAGGCCGTGAGTTCAGCAGCAGAAG 340
||||||||||||||||||||||||| || |||||| ||||||||||| |||||||||||
Sbjct 450 TGGCTCTGATCTTAATCATTCAGGCGTTCCACCTCGTGGCCGTGAGTTAAGCAGCAGAAG 509
Query 341 GGAAGCATCTGGGAGACACAGAGACTATTCACCACCC-TATGCTAGAGGTGGAGCTGGTG 399
||||||| |||||||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct 510 GGAAGCACCTGGGAGACACAGAGACTATTCCCCACCCTTA-GCTAGAGGTGGAGCTGGTG 568
Query 400 CTCGTCCTTATGGAAGAGGTTTAGATGGGCCTGAACCTGCACATGGAAGCGATGGCATGA 459
||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 569 CTCGTCCTTATCGAAGAGGTTTAGATGGGCCTGAACCTCCACATGGAAGGGATGGCATGA 628
Query 460 GCAGAAATAATATCCCAAAGGTGCAACCAAGAGATGGAGATTGGTACTGTCTAGATCCAT 519
||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 629 GCAGAAATAATATATCAAAGGTGCAACCAAGAGAAGGAGATTGGTACTGTCTTGATCCAT 688
Query 520 TATGCAGAAACTTGAACTTTGCGAGACGTGAGTCCTGCAACAAATGTAAGAGGCATCGTT 579
|||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct 689 TATGCAGAAACTTGAACTTTGCGAGACGCGAGTCCTGCTACAAATGCAAGAGGCATCGTT 748
Query 580 ATGCACCGGCTAGTAGTCCTCCACTGCCTCGTCTTCCTCCTCCTCCCATGAATC-TCTCC 638
|||||||||||| |||||||||||||||||| |||| ||||||||||||||||| | |||
Sbjct 749 ATGCACCGGCTAATAGTCCTCCACTGCCTCGCCTTCTTCCTCCTCCCATGAATCAT-TCC 807
Query 639 CCAAGAAGAGACTTTAATGGCTACAGATCTCCTCCACGTGGCTGGCCCAGAGACTACCCG 698
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 808 CCAAGAAGAGACTTTAATGGCTACAGATCTCCTCCGCGTGGCTGGCCCAGAGACTACCCG 867
Query 699 CCCCCAAGGCATGACCATCCCACATGGAGAGACAGAGAACGAGACCGTCCGCATTACTCA 758
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 CCGCCAAGGCATGACCATCCCACATGGAGAGACAGAGAACGAGACCGTCCGCATTACTCA 927
Query 759 GACCATGAGTACCCTCCTAGCAGAAGAATAGCGTCTGACTGGGCCCATACAGAGCCACTC 818
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 928 GACCATGAGTACCCTCCTAGCAGAAGGATAGCATCTGACTGGGCCCATACAGAGCCGCTC 987
Query 819 CCAAAACCTCATTACAACAGACGACCACCTCTCAGTCCACCGCATCCTCCACCTCGTGGT 878
|||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 988 CCAAAACCTCATTATGACAGACGACCACCTCTCAGTCCACC---TC---------GTGGT 1035
Query 879 GGCAGATGGGGACGACTTTCAAGAGAGAGGAGCAGATCACCGCCATTGAGAGATGTTCCA 938
||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1036 GGCAGATGGGGACGAGTTTTGAGAGAGAGGAGCAGATCCCCGCCATTGAGAGATGTTCCA 1095
Query 939 CCACCGCCATTGAGAGATGGTCCACCACCGTCATTGAGAGGAGGCGGCGGTCCAACGCTG 998
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1096 CCACCGCCATTGAGAGATGGTCCACCACCGTCATTGAGAGGAGGCGG---TCCACCGCTG 1152
Query 999 CACAGAGATTACCGCCGTGACAGTAACTTTGACA-ATGGAAGACGAGATGATCGTCGTGG 1057
|||||||||||||||||||||||| ||||||||| | | ||||||||| ||| | |||||
Sbjct 1153 CACAGAGATTACCGCCGTGACAGTCACTTTGACAGA-GAAAGACGAGACGATGGGCGTGG 1211
Query 1058 CGGCAGAGGCAGAATGGGAAACTCTTACTGATGCAAAAACCGTGCATGTCTT 1109
|||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1212 CGGCAGAGGCAGAATGGGAAACTCTTACTGATGCAAAAACTGTGTATGTCTT 1263
Score = 255 bits (138), Expect = 5e-67
Identities = 193/217 (89%), Gaps = 13/217 (6%)
Strand=Plus/Plus
Query 3 ACAATCGGAGAGAAATAAATGGGGTCGACTGaaaaaaaTCAGACGACGCAGCATCACCCG 62
|||||||||||| ||||||||||||| |||||| | ||||||||||| |||||||||
Sbjct 41 ACAATCGGAGAG----AAATGGGGTCGACAGAAAAAGAGCAGACGACGCAACATCACCCG 96
Query 63 CCTCACATCAGCAGTCTCGTCGTACGACCCTCCGGAAGCAACGACGGAGAAGACGGCCGC 122
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 97 CCTCACATCAGCAGTCTCGTCGTACGTCCCTCCGGAAGCAACGACAGAGAAGACGGCCGC 156
Query 123 AACGTCGCCGCCGCCGCCGGAGACTATGAGCCCGGAGAAGTTTCTCGTGACCGGCCTTCA 182
|||| | | |||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct 157 AACG-C-C-GCCG--G----AGACTATGAGCCCGGAGAAGTCTCTCGTGACCGGCCTTCG 207
Query 183 TATACTCGCACGGATCGGTATAAGGGTGACAATGGTG 219
| || |||| |||||||||||||||||||||||||||
Sbjct 208 TTTAATCGCTCGGATCGGTATAAGGGTGACAATGGTG 244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54417390780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5