BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945129
Length=671
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28950.1 | Symbols: ARAC7, ATROP9, ATRAC7, RAC7, ROP9 | RHO-... 1046 0.0
> AT4G28950.1 | Symbols: ARAC7, ATROP9, ATRAC7, RAC7, ROP9 | RHO-related
protein from plants 9 | chr4:14277994-14279984 FORWARD
LENGTH=1204
Length=1204
Score = 1046 bits (566), Expect = 0.0
Identities = 637/672 (95%), Gaps = 2/672 (0%)
Strand=Plus/Plus
Query 1 TTTGGTTCTTGGACTAAGATAATGAGCGCTTCCAAGTTCATAAAATGTGTTACTGTTGGA 60
||| ||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||
Sbjct 275 TTTTGTTCTTGGACTAAGAGAATGAGTGCTTCGAAGTTCATAAAATGTGTTACTGTTGGA 334
Query 61 GATGGAGCTGTCGGGAAGACATGTATGCTTATCTGTTACACTAGCAACAAGTTTCCTACT 120
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 GATGGGGCTGTTGGGAAGACATGTATGCTTATCTGTTACACTAGCAACAAGTTTCCTACT 394
Query 121 GATTATATCCCGACTGTGTTCGACAATTTCAGTGCCAATGTAGCTGTGGATGGACAAATC 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 GATTATATACCGACTGTGTTCGACAATTTCAGTGCCAATGTAGCTGTGGATGGACAAATC 454
Query 181 GTGAATTTAGGGCTATGGGACACTGCAGGTCAAGAAGATTACAGTAGGTTGAGACCATTG 240
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 455 GTTAATTTAGGGCTATGGGACACTGCCGGTCAAGAAGATTACAGTAGGTTAAGACCATTG 514
Query 241 AGTTACAGAGGAGCTGATATCTTTGTCTTAGCCTTTTCGCTTATTAGCAAGGCGAGTTAC 300
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 515 AGTTATAGAGGAGCTGATATCTTCGTCTTAGCCTTTTCGCTTATTAGCAAGGCGAGTTAC 574
Query 301 GAGAATGTACTAAAGAAGTGGATGCCTGAACTTCGTCGGTTTGCCCCAAATGTTCCCATA 360
|| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 575 GAAAATGTACTCAAGAAGTGGATGCCTGAACTTCGTCGGTTTGCGCCAAATGTTCCCATA 634
Query 361 GTTCTTGTTGGTACAAAGCTAGATCTCCGAGATGATAAGGGATACCTCGCGGATCACACC 420
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 635 GTTCTTGTTGGTACAAAGCTAGATCTCCGGGATGACAAGGGATACCTCGCGGATCACACC 694
Query 421 AATGTCATTACATCTACTCAGGGAGAGGAACTGAGGAAGCAAATTGGTGCAGCTGCTTAT 480
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 695 AATGTCATTACCTCTACTCAGGGAGAGGAATTGAGGAAGCAAATTGGTGCAGCTGCTTAT 754
Query 481 ATCGAGTCCAGTTCCAAGACTCAACAAAATGTGAAAGCAGT-TTTCGACACAGCGATCAA 539
|| |||| |||||||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct 755 ATTGAGTGTAGTTCCAAGACTCAACAAAATGTGAAAGCAGTGTTT-GATACAGCGATCAA 813
Query 540 GGTGGTTCTTCAGCCTCCAAGGAGGAAGGAGGTCACAAGGAGGAAGAAGAAACATAGAAG 599
||||||||||||||||||||||||||| |||||| | ||||||| |||||| ||||||||
Sbjct 814 GGTGGTTCTTCAGCCTCCAAGGAGGAAAGAGGTCCCGAGGAGGAGGAAGAATCATAGAAG 873
Query 600 ATCCGGTTGCTCCATTGCGAGTATTGTCTGTGGAGGCTGCACCGCGGCTTAAGGCACAAC 659
|||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||
Sbjct 874 ATCCGGTTGCTCCATTGCGAGTATTGTCTGTGGAGGTTGCACCGCTGCTTAAGACACAAC 933
Query 660 ACAAGTCTCAAC 671
| |||| |||||
Sbjct 934 AAAAGTTTCAAC 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32451258962
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5