BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945132
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28920.1 | Symbols: | Protein of unknown function (DUF626) ... 313 2e-84
> AT4G28920.1 | Symbols: | Protein of unknown function (DUF626)
| chr4:14268415-14269885 REVERSE LENGTH=879
Length=879
Score = 313 bits (169), Expect = 2e-84
Identities = 481/623 (77%), Gaps = 56/623 (9%)
Strand=Plus/Plus
Query 55 GAAATAGACCCCGAAGAAGCGCAAGAGTATCTACGCCAAGTTCAAGAGTCCGACGGTTTC 114
||||| ||||| ||||||| ||| |||| ||| |||||| |||||||||| |||||
Sbjct 34 GAAATGGACCCTGAAGAAGAAAAAGTGTATAGACGGCAAGTTGAAGAGTCCGATGGTTTT 93
Query 115 GATGTTGATTACTTTCACAATTCATATGCTCGGATAAAACCCTTTCAATTGAATGATGAG 174
||||||||||||||| | ||||||| ||||||| |||| || |||||| ||||||
Sbjct 94 GATGTTGATTACTTT----A--GATATGCTGGGATAAAGCCCTGTCCATTGAAAGATGAG 147
Query 175 TATGGTTATACACATGACATCGAACTTTATGGTAGATTGGGACTTCACTGTTACAATCTT 234
||| |||||| |||| |||||||||| ||| |||||||||||||||||||||||||||
Sbjct 148 AATGCTTATACTTATGATATCGAACTTTTTGGAAGATTGGGACTTCACTGTTACAATCTT 207
Query 235 CA-CA--AGGGAACTAACCTCAAATTAATC-GACATTCACAAATACAACACTGAG----T 286
| || ||||||| ||||||||| | || | ||||| ||| ||||||||| | |
Sbjct 208 CTTCACGAGGGAACCAACCTCAAACTCATGTG-CATTCCCAAGTACAACACTAATAACAT 266
Query 287 TGTT-T---TT-TGGG---TACTAC-A--TAACGTTGGAGGCAGTAGACACATATACCAA 335
|| | || |||| |||||| | |||||||||||||| |||||||||| | |||
Sbjct 267 TGGGGTAAGTTCTGGGGACTACTACTACATAACGTTGGAGGCAATAGACACATACAACAA 326
Query 336 CTCTCCATGCACTTTTCAAACGTGCGTACGGGAG-GGTA--AAACTTGGGAACATGGATA 392
||||||||||||||||||||||| |||| | || |||| |||||| |||||||||||
Sbjct 327 CTCTCCATGCACTTTTCAAACGTACGTAAGTGAATGGTATCAAACTTCAGAACATGGATA 386
Query 393 CTTTATGGTACAAACAGAGATTTCCAGATTAAAAGGGCCT-C-GGAC-T-A-----CTTC 443
| || ||||| | ||| | ||| | ||||||||||| ||| | || | | | |||
Sbjct 387 CCTTGTGGTAGAGACATATATTGCTAGATTAAAAGGTCCTACTGGCCCTCATAATACTTG 446
Query 444 TATTGGGCCTCAGAGGAGATGGGAA-G--ATGAGGTGGT-A--GATGATTT-CTACAAAA 496
|||||| | | | ||| ||||| | | | |||| || | |||| ||| |||||||
Sbjct 447 TATTGGACGTGGGTGGATATGGGGATGGGAAGAGGAGGCCATCGATG-TTTACTACAAAG 505
Query 497 GTGAAA-TGCCTAACTGGTTGACAAAGGAGGAGCTAGCTGCAGCTAATGATAAGGGGCAA 555
|| ||| ||||||| ||||||||||| || | | |||||||| || ||| | ||
Sbjct 506 GT-AAACTGCCTAAGTGGTTGACAAAAGATTTGTTGGCTGCAGCCAAGGAT--G----AA 558
Query 556 TACTATGAGTTGCAAGAATCTGAC-TTACTAGGAAATGAATGGCTTCATCTTTATGCTGA 614
||||||| | |||||||||| ||| || |||| |||||| ||||||||||| ||||||||
Sbjct 559 TACTATGTGGTGCAAGAATCAGACATT-CTAGAAAATGAGTGGCTTCATCTGTATGCTGA 617
Query 615 GTTTGCATTGTCCTTGAACTGGA 637
| ||||||||| || |||||||
Sbjct 618 GATTGCATTGTACTCCAACTGGA 640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45461903035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5