BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945138

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G22180.1 | Symbols:  | DHHC-type zinc finger family protein ...   209    2e-53
  AT3G01020.1 | Symbols: ISU2, ATISU2 | ISCU-like 2 | chr3:5104-6...   150    1e-35


> AT3G22180.1 | Symbols:  | DHHC-type zinc finger family protein 
| chr3:7827036-7830813 FORWARD LENGTH=2580
Length=2580

 Score =  209 bits (113),  Expect = 2e-53
 Identities = 120/123 (98%), Gaps = 1/123 (1%)
 Strand=Plus/Plus

Query  128  CTC-TCGGGTGATTGCAATTACGGTGTTTTGCTTGTTGGTGGTCGCTTTCTATGCTTTCT  186
            ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  192  CTCTTCAGGTGATTGCAATTACGGTGTTTTGCTTGTTGGTGGTCGCTTTCTATGCTTTCT  251

Query  187  TCGCTCCTTTTGTTGGAGGTCGTATTTGGGAATACGTTTTGATCGGTGTTTACTCTCCTG  246
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  252  TCGCTCCTTTTGTTGGAGGTCGTATTTGGGAATACGTTTTGATCGGTGTTTACTCTCCCG  311

Query  247  TGG  249
            |||
Sbjct  312  TGG  314


 Score =  115 bits (62),  Expect = 4e-25
 Identities = 64/65 (98%), Gaps = 0/65 (0%)
 Strand=Plus/Plus

Query  4    TTGTTGTTGAAGAAGAAGGTATGGTGAGGAAACACGGTTGGCAACTTCCCGCTCACACTC  63
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  135  TTGTTGTTGGAGAAGAAGGTATGGTGAGGAAACACGGTTGGCAACTTCCCGCTCACACTC  194

Query  64   TTCAG  68
            |||||
Sbjct  195  TTCAG  199


 Score = 87.9 bits (47),  Expect = 8e-17
 Identities = 56/60 (93%), Gaps = 1/60 (2%)
 Strand=Plus/Plus

Query  259   ATGTTGTGGCAATGAGAGCCATGAGCGAGACGCTAGATGGAGCATCTGTTGATGAGAGAA  318
             ||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||| |||
Sbjct  1065  ATGTTGTGGCAATGAGAGCCATGAGCGAGGCGCCAGATGGAGCATCTGTTGACGAG-GAA  1123


> AT3G01020.1 | Symbols: ISU2, ATISU2 | ISCU-like 2 | chr3:5104-6049 
FORWARD LENGTH=683
Length=683

 Score =  150 bits (81),  Expect = 1e-35
 Identities = 99/108 (92%), Gaps = 0/108 (0%)
 Strand=Plus/Plus

Query  375  AAGGATCTAAGGTTGCCACCCGTTAAGCTACATTGCAGTATGCTTGCAGAGGACGCTATC  434
            ||| |||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct  390  AAGCATCTTAGGTTGCCACCGGTAAAGCTACATTGCAGTATGCTTGCAGAGGACGCTATC  449

Query  435  ATGTCTGCGGTCAGAGACTACAAAGAGAAGCAAGCATAGGCTAATGCT  482
            | ||| ||||||||||||||||| |||||||||||| || ||||||||
Sbjct  450  AAGTCCGCGGTCAGAGACTACAAGGAGAAGCAAGCAAAGACTAATGCT  497



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23509580796


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5