BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945147
Length=5383
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28811.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1524 0.0
AT4G28800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1123 0.0
AT4G28815.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 355 2e-96
AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 143 2e-32
> AT4G28811.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14225208-14228071 FORWARD
LENGTH=1993
Length=1993
Score = 1524 bits (825), Expect = 0.0
Identities = 1138/1285 (89%), Gaps = 38/1285 (3%)
Strand=Plus/Plus
Query 2689 GTGAAGATGATGTGGTGGAGCTCTTATGGAAAAGCGGCCAAGTCGTTCAAAGCAGCCAGA 2748
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 447 GTGAAGATGATGTGGTGGAACTCTTATGGAAAAGCGGCCAAGTCGTTCAAAGCATCCAGA 506
Query 2749 CACAGAGATCCATTCCTCCTCCCATTTTCCGCGGCAGCGGAAGCAGGAGCGGTGAAGAAA 2808
|||||||| |||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 507 CACAGAGACCCATTCCTCCTCCCATTTTCCGCGGCAGCGGAAGTGGGGGAGGTGAAGAAA 566
Query 2809 CTGCTCTCCCTCCGCCTCCCCTGCATCCTTCTCAGCAGATTCTCTTTATCCAGGAAGACG 2868
||| ||| |||| ||||||||||||||| ||||| || | | |||| |||||||||||||
Sbjct 567 CTGTTCTGCCTCTGCCTCCCCTGCATCCGTCTCATCAAAATATCTTCATCCAGGAAGACG 626
Query 2869 AAATAGCGTCTTGGCTTTACCATCCTCTCC-TCCAAGATTATCTTTCCTCCGGCGTCACT 2927
|||| || ||||||||||||||||| |||| || |||||||| ||||||| |||||| |
Sbjct 627 AAATGGCCTCTTGGCTTTACCATCCCCTCCGTC-AAGATTATTTTTCCTCTGGCGTCGCC 685
Query 2928 TCTACTCCGGCTACTCACC-GACAAGGTTCCGTCTCTCTGGCACCA-C-C-ACCACCACT 2983
|||||| | ||||||| || | ||| |||||| |||||| |||||| | | ||||||||
Sbjct 686 TCTACTTCAGCTACTCGCCCG-CAAAGTTCCGCCTCTCTAGCACCAACACCACCACCACC 744
Query 2984 CAGTGCTCCGTACGGTCAGATTACCGCTGCCAGAAGGACAGATAATTTTATGAACTTCTT 3043
||||| ||| |||||||||||| ||| || ||||||||||| |||||||||||||||||
Sbjct 745 CAGTGTTCCCTACGGTCAGATTCCCGTTGAGAGAAGGACAGAGAATTTTATGAACTTCTT 804
Query 3044 GAGGCTTAA-AGGGAACATACTTACCGGCGGTAGAGTTGAAGCTGGGCCGGTGGTGATAG 3102
|||||| || |||||||||| || |||||||||||||||||||||| |||||||| ||||
Sbjct 805 GAGGCT-AAGAGGGAACATATTTTCCGGCGGTAGAGTTGAAGCTGGTCCGGTGGTTATAG 863
Query 3103 AATCGACGCAGGTAGGCTCAAGCGCGACCCCGTCGTCTTCAGCCACTGAATCCTGTGTAA 3162
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 864 AATCGACGCAGATAGGCTCAAGCGCGACCCCGTCGTCTTCAGCCGCTGAATCCTGTGTAA 923
Query 3163 TACCAGTGACTCACGGCACCGAGAGTCGAGCAACGGTCATTGGCGGAGTATCCCGTACTT 3222
|||||| ||||||||||||||||||| |||| ||| |||| |||||||||||||||||
Sbjct 924 TACCAGCGACTCACGGCACCGAGAGTAGAGCGGCGGCCATTACCGGAGTATCCCGTACTT 983
Query 3223 TTGCAGTTCCCGGTTTTGGTAGGAGGGGAAAGGCGGTGGCGATCGAGACGGCTGGAACAT 3282
|||||||||| ||| ||||| |||||||||||| |||||| | ||||||||| |||||||
Sbjct 984 TTGCAGTTCCTGGTCTTGGTCGGAGGGGAAAGGAGGTGGCAACCGAGACGGCCGGAACAT 1043
Query 3283 CATCTTCGGGGGTATGCAAGGCCGAAACAGAGCCGGTTCGAATACAACCGGAGACTGAGA 3342
||| ||| |||||| ||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 1044 CATATTCAGGGGTAAACAAGGCCGAAACAGAGCGGGTTCAAATACAACCGGAGAGGGAGA 1103
Query 3343 CGGAAATTTCCGAAGACAGGGAGCGAAAGGAGAGAGAAGAAACCATTGTC-GAAATCCAG 3401
|| ||||| ||||||| | || || | ||||| | |||||||||| | ||||||||
Sbjct 1104 CGAAAATTACCGAAGATA---AG--AA-G-AGAGA-A-GAAACCATTG-CAGAAATCCAA 1153
Query 3402 GGAACTGAAGAAGCTCGTGGTTCAACGTCTAGGAAGAGGTCACGAGCTGCAGAAATGCAT 3461
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1154 GGAACTGAAGAAGCTCATGGTTCAACGTCTAGGAAGAGGTCACGAGCTGCAGATATGCAT 1213
Query 3462 AACCTCGCCGAAAGGAGAAGGAGAGAAAAGATCAACGAGAAGATGAAGACTCTGCAAGAA 3521
|||||| ||||||||||| |||| |||| ||||||||||| |||||| ||||||||||||
Sbjct 1214 AACCTCTCCGAAAGGAGACGGAGGGAAAGGATCAACGAGAGGATGAAAACTCTGCAAGAA 1273
Query 3522 CTCATTCCTCGCTGCA-ACAAGTCT-ACTAAAGTTTCAACGCTGGAAGATGTTATCGAGT 3579
||| |||||||||||| | ||| || | ||||||||||| ||| ||||||||||||||||
Sbjct 1274 CTCCTTCCTCGCTGCAGA-AAGACTGA-TAAAGTTTCAATGCTTGAAGATGTTATCGAGT 1331
Query 3580 ACATGAAATCACTACAGATGCAAATACAGATGATGTCGATGGGTCATGGTATGATGCCAC 3639
|| ||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1332 ACGTGAAATCGCTACAGCTGCAAATACAGATGATGTCGATGGGACATGGTATGATGCCAC 1391
Query 3640 CGATGATGAATGCGGAGAATATGCAACAGTTCATGCCCCACATGGCCATGGGGATGAA-- 3697
|||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1392 CGATGATGCATGAGGGGAATACGCAACAGTTCATGCCCCACATGGCCATGGGGATGAAGG 1451
Query 3698 -------CCGGCCTCCTCCATTCATACATTTCCCTGGCACAGCTTTTCCTAGGCCGGGTC 3750
|||||||||||| ||| ||| ||||| |||| | ||||||||||||||||||
Sbjct 1452 GTATGAACCGGCCTCCTCCTTTCGTACCGTTCCCCGGCAAAACTTTTCCTAGGCCGGGTC 1511
Query 3751 ATATGGCAGGTGTAGGTCCATCATATCCAGCATCGCGCTACCCTTTTCCAAACACACAAG 3810
||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||
Sbjct 1512 ATATGGCAGGTGTAGGTCCATCATACCCAGCATTGCGCTACCCTTTTCCAGACACACAAG 1571
Query 3811 CTTCTGACCCACCCAGAGTCCAAT-TACCAAGTCTGGAGACTGATAACCCGGTGCCAAAC 3869
| ||||||| | |||||||||| | ||||||||||| | || ||||||||||||||||
Sbjct 1572 CCTCTGACCTATCCAGAGTCCA-TGTACCAAGTCTGCA--CTC-TAACCCGGTGCCAAAC 1627
Query 3870 CAGCCTCTATTTCCGGCTTACATGAATCCTTATAGCCAGTTTGTTGGTCTCCACCAGATG 3929
||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1628 CAGCCTCGGTTTCCGGCTTACATAAATCCCTATAGCCAGTTTGTTGGTCTCCACCAGATG 1687
Query 3930 CAACAACCTCCTCCTCCATTGCAGG 3954
||||||||||||| |||||||||||
Sbjct 1688 CAACAACCTCCTCTTCCATTGCAGG 1712
Score = 551 bits (298), Expect = 3e-155
Identities = 490/579 (85%), Gaps = 27/579 (5%)
Strand=Plus/Plus
Query 1709 AACCATTGTC-GAAATCCAGGGAACTGAAGAAGCTCGTGGTTCAACGTCCAGGAAGAGGT 1767
|||||||| | |||||||| |||||||||||||||| |||||||||||| ||||||||||
Sbjct 1135 AACCATTG-CAGAAATCCAAGGAACTGAAGAAGCTCATGGTTCAACGTCTAGGAAGAGGT 1193
Query 1768 CAAGAACTGCAGAAATGCATAATTTCGCCGAAAGGAGACGGAGAGAAAAGATCAACGAGA 1827
|| || ||||||| |||||||| || |||||||||||||||| |||| |||||||||||
Sbjct 1194 CACGAGCTGCAGATATGCATAACCTCTCCGAAAGGAGACGGAGGGAAAGGATCAACGAGA 1253
Query 1828 ATAT-AAAGACTCTGCAAGAACTCATTCCTCGCTGCA-ACAAGTC-CACTAAAGTTTCAA 1884
|| ||| ||||||||||||||| |||||||||||| | ||| | | |||||||||||
Sbjct 1254 GGATGAAA-ACTCTGCAAGAACTCCTTCCTCGCTGCAGA-AAGACTGA-TAAAGTTTCAA 1310
Query 1885 CGCTGGATGATGCTATCGAGTACGTCAAATGGCTACAG-AGCCAAATACAAATGATGTCG 1943
||| || |||| |||||||||||| |||| ||||||| | |||||||| |||||||||
Sbjct 1311 TGCTTGAAGATGTTATCGAGTACGTGAAATCGCTACAGCTG-CAAATACAGATGATGTCG 1369
Query 1944 ACAGGACAGGGTATGATGCCGCCAATGATGTATGCA-GGGAATACGCAACAGTTCATGCC 2002
| ||||| ||||||||||| || |||||| ||| | |||||||||||||||||||||||
Sbjct 1370 ATGGGACATGGTATGATGCCACCGATGATGCATG-AGGGGAATACGCAACAGTTCATGCC 1428
Query 2003 CCACATGGCCATGG--AT-A----T--GAACCGGCCTCCGCCATTCATACCTTTCCCCGA 2053
|||||||||||||| || | | |||||||||||| || ||| |||| |||||||
Sbjct 1429 CCACATGGCCATGGGGATGAAGGGTATGAACCGGCCTCCTCCTTTCGTACCGTTCCCCGG 1488
Query 2054 CACACCATTTCCTAGGCCGGCTCAAATGGC-GGATGTAGATCCATCATATCCAGCACCGC 2112
|| | | ||||||||||||| ||| ||||| || ||||| ||||||||| |||||| ||
Sbjct 1489 CAAAACTTTTCCTAGGCCGGGTCATATGGCAGG-TGTAGGTCCATCATACCCAGCATTGC 1547
Query 2113 GCTACCCTTTATCCGG-CATTCAAACCTTTGACCCATCCAGAGTCCATTTACGAAGTCCG 2171
|||||||||| ||| | || ||| ||| ||||| ||||||||||||| ||| ||||| |
Sbjct 1548 GCTACCCTTT-TCCAGACACACAAGCCTCTGACCTATCCAGAGTCCATGTACCAAGTCTG 1606
Query 2172 CAGC-CTAACCCGGTGTCGAACCAGCCACAGTTTCCGGCTTACATGAATCCCTATAGCCA 2230
|| | ||||||||||| | |||||||| | ||||||||||||||| ||||||||||||||
Sbjct 1607 CA-CTCTAACCCGGTGCCAAACCAGCCTCGGTTTCCGGCTTACATAAATCCCTATAGCCA 1665
Query 2231 GTTTGCTGATCTCCACCAGTTGCAACAACCTCCTCCTCC 2269
||||| || |||||||||| ||||||||||||||| |||
Sbjct 1666 GTTTGTTGGTCTCCACCAGATGCAACAACCTCCTCTTCC 1704
Score = 350 bits (189), Expect = 1e-94
Identities = 269/308 (87%), Gaps = 4/308 (1%)
Strand=Plus/Plus
Query 2285 GGGTGAAGATGATATAGTGGAACTCTTATGGAAGAGCGGCCAACTCGTTCGAACCACCCA 2344
||||||||||||||||||||| ||||||||| | | ||||||| |||||||||||| |||
Sbjct 130 GGGTGAAGATGATATAGTGGAGCTCTTATGG-A-A-CGGCCAAGTCGTTCGAACCAGCCA 186
Query 2345 AACACAGAGACCTTCCTCCGATAAACCCTCTTCTCCTCCACCCGTTCTCCGCGGTAGTGG 2404
| |||| ||||||||||| | |||||| ||| || |||||||| |||| || ||||| ||
Sbjct 187 ACCACAAAGACCTTCCTCGGGTAAACCTTCTCCTACTCCACCCATTCTGCGTGGTAGCGG 246
Query 2405 AAGCGGCGGGGGAGATGAAAATGCTCCACTTCCGCTTCCGCTTCCACAGCCTCCACCTCC 2464
||||||| | ||||| ||||||||||| ||||| ||||| |||| ||| ||||||| |||
Sbjct 247 AAGCGGCAGCGGAGAAGAAAATGCTCCCCTTCCACTTCCACTTCTACAACCTCCACGTCC 306
Query 2465 CCTGCATCATCAGAATCTCTTCATTCAGGAAGATGAATTGTCTTCCTGGCTTCACAATTT 2524
|||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||| |||
Sbjct 307 CCTGCATCATCAGAATCTCTTCATTCGGGAAGAAGAAATGTCTTCTTGGCTTCACTATTC 366
Query 2525 TTACCCCGGCGTCACGTCCACCCCGGCTACTCATCCCCAAAGTTCTGTCTCCCTGCCACC 2584
|||| | || ||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 367 TTACACTGGTGTCACGTCCACACCGGCTACTCATCCGCAAAGTTCTGTTTCCCTGCCACC 426
Query 2585 ACCATCCA 2592
|||| |||
Sbjct 427 ACCA-CCA 433
Score = 178 bits (96), Expect = 5e-43
Identities = 248/317 (78%), Gaps = 27/317 (9%)
Strand=Plus/Plus
Query 5076 CCTAGGCAGGCTCATATGGCGGGTGTAGGTCCATCATATCCACCACCGCACAACCCTTTT 5135
||||||| || ||||||||| ||||||||||||||||| ||| || || | ||||||||
Sbjct 1499 CCTAGGCCGGGTCATATGGCAGGTGTAGGTCCATCATACCCAGCATTGCGCTACCCTTTT 1558
Query 5136 CCAAACATTCA-GACCTTTGACCCATCCAGAGGT--AGGTTACAAAGTCCGCAGC-CTAA 5191
||| ||| || | ||| ||||| |||||||| | | || || ||||| ||| | ||||
Sbjct 1559 CCAGACACACAAG-CCTCTGACCTATCCAGAG-TCCATGT-ACCAAGTCTGCA-CTCTAA 1614
Query 5192 TCCGGTGCCGAACC-GAC-C--T--CAG----A--TGAATCCTTATAGCCAGTTTGTAGG 5239
|||||||| |||| | | | | | | | | ||||| |||||||||||||| ||
Sbjct 1615 CCCGGTGCCAAACCAGCCTCGGTTTCCGGCTTACATAAATCCCTATAGCCAGTTTGTTGG 1674
Query 5240 CCACCACCAGATACAACAACCTTCTTTTCCTCCATTGCAGAGTCAAACAACATCACAGC- 5298
| ||||||||| ||||||||| || |||| ||||||| ||||| ||||||||||||
Sbjct 1675 TCTCCACCAGATGCAACAACCTCCTCTTCC---ATTGCAGGGTCAACCAACATCACAGCC 1731
Query 5299 TGAGCTTCGGCCAGGCAAGTAGTAGCAAGGAACCTGATGATCAGAACAACCAACCA-CAA 5357
| || ||| |||| ||||||| ||||||| ||| || |||||| ||||||||||| |||
Sbjct 1732 T-AGTTTCAGCCACGCAAGTACTAGCAAGTAACTTGGGGATCAGGACAACCAACCAACAA 1790
Query 5358 GGTTAGAAAGAATCAGG 5374
| |||| | ||||||||
Sbjct 1791 G-TTAGTAGGAATCAGG 1806
> AT4G28800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14221970-14224075 FORWARD
LENGTH=1338
Length=1338
Score = 1123 bits (608), Expect = 0.0
Identities = 1089/1301 (84%), Gaps = 114/1301 (9%)
Strand=Plus/Plus
Query 1019 GTTTGGGTTTTGGTTTGAAATTAGGGGTGAAGATGATATTGTGGAGCTCTTATGG-AAGA 1077
|||| || ||||||||||||||||| ||||||||||||| |||||||| |||||| || |
Sbjct 28 GTTT-GGATTTGGTTTGAAATTAGGCGTGAAGATGATATAGTGGAGCTTTTATGGCAA-A 85
Query 1078 GCGGCCGAGTCGTTCAAAGCAGCCAGACACAGAGACCTTCTTCCGATCCTCCTCCCATTC 1137
|||||| ||| ||| || || ||| ||||| |||| || | |||||||||||||||||
Sbjct 86 GCGGCCAAGTAGTTGGAACCAACCAAACACATAGACAATCCTACGATCCTCCTCCCATTC 145
Query 1138 TCCGCGGCAGCGGAAGCGGCGGCGGAGAAGAAGAAGAAAATGC-CCCGCTTCCTCCACCT 1196
|||||||||||||||| ||| | || || ||||||||||| ||| ||| || ||
Sbjct 146 TCCGCGGCAGCGGAAGTGGCAG---AG--GA-GAAGAAAATGCTCCC-CTT--TC-ACA- 194
Query 1197 CCACCTCTGCCTCCCCTGCATCATCAAAATCTCTTCATTCAAGAAGACGAAATGTATTCT 1256
||||| ||||| ||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 195 --ACCTCCGCCTCACCTGCATCAGCAAAATCTCTTCATTCAAGAAGGCGAAATGTATTCG 252
Query 1257 TGGCTTCACCAATCTTACCGCCAAGATTATTTATGCTCCGAACTTCGCTACTCCGGCGTC 1316
||||| ||||| |||||||||||| | ||||| ||||| ||||||| | ||||| | ||
Sbjct 253 TGGCTACACCATTCTTACCGCCAAAACTATTTCTGCTCAGAACTTCTCAACTCCA-C-TC 310
Query 1317 GCCTCCAATCCGGCTACTCACCCGCAAAGTTCCATCTCTCCGGCACCATGTCCTTTTGCT 1376
| ||||||||||||||||||||||||||||| ||||||| | | |
Sbjct 311 -C---------GGCTACTCACCCGCAAAGTTCCATCTCTCTGGCACCA---C-----G-T 351
Query 1377 CCATACGATCAGCGGGGTCAGACTATCGCCACGAGAAGGGTGGAGAACTTTATGAACTTC 1436
| | || ||| || || | | | || | ||| ||| |||||||||||||||
Sbjct 352 C-AGACTATC-GC-----CA--C----G--A-GA-A-GGGCGGAAAACTTTATGAACTTC 393
Query 1437 TCGTGGCTAAGAGGGAACATATTTACTGGCGGTAGAGTTGA--A-GCTGGA--GT-G--- 1487
|||||||||||||||||||||||||| |||||||||||||| | |||||| || |
Sbjct 394 TCGTGGCTAAGAGGGAACATATTTACCGGCGGTAGAGTTGATGAAGCTGGACCGTCGTTT 453
Query 1488 --G-TG--A-GAGAATCGATCCAGTTGGGTTCGAGCACGACCCC---TTCGTCTTCGGCC 1538
| || | |||||||||| ||| | || |||| ||||||||| ||| ||||| |||
Sbjct 454 TCGGTGGTAAGAGAATCGATGCAGGTAGGCTCGAACACGACCCCCCCTTCTTCTTCTGCC 513
Query 1539 ACTGAATCATGTGTAATACCAGCGACAGAAGGCACCGAGAGTCGAGTGTCACAAACTTTG 1598
||||||||||||||||||||||| ||||| ||||||| |||||||||||| |||||||
Sbjct 514 ACTGAATCATGTGTAATACCAGCTACAGAGGGCACCGCGAGTCGAGTGTCGGGAACTTTG 573
Query 1599 GCAGTTCCTGGTCTTGGTCAGAAGGGAAAGGCGGTGGTGATTGAAACGGCCGGAACTCCA 1658
|||| || || |||||||| ||||||||||||||||| | |||| |||||||||| |||
Sbjct 574 GCAGCTCATGATCTTGGTCGGAAGGGAAAGGCGGTGGCGGTTGAGGCGGCCGGAACACCA 633
Query 1659 TCTTCAGGAGTGTGCAAGGCCGAAACAGAGCCGGTTCAGATACAACCAGCAACC-ATT-G 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 634 TCTTCAGGAGTGTGCAAGGCCGAAACAGAGCCGGTTCAGATACAACCAGCAACGGAGTCG 693
Query 1717 ----T-----CGA-A-AT----CC-AGGGAACTGAAGAAGCTCGTGGTTCAACGTCCAGG 1760
| ||| | | || | ||||||||||||||||||||||||||||| ||
Sbjct 694 AAGCTAAAAGCGAGAGAAGAAACCCATGGAACTGAAGAAGCTCGTGGTTCAACGTCTAGA 753
Query 1761 AAGAGGTCAAGAACTGCAGAAATGCATAATTTCGCCGAAAGGAGACGGAGAGAAAAGATC 1820
||||| ||| ||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 754 AAGAGATCACGAACTGCAGAAATGCATAACCTCGCCGAAAGGAGAAGGAGAGAAAAGATC 813
Query 1821 AACGAGAATATAAAGACTCTGCAAGAACTCATTCCTCGCTGCAACAAGTCCACTAAAGTT 1880
|||||||| || |||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 814 AACGAGAAGATGAAGACTCTGCAACAACTCATTCCTCGCTGCAACAAGTCTACTAAAGTT 873
Query 1881 TCAACGCTGGATGATGCTATCGAGTACGTCAAATGGCTACAGAGCCAAATACAAATGATG 1940
|||||||||||||||||||||||||||||||||| | ||||||||||||||||| | |
Sbjct 874 TCAACGCTGGATGATGCTATCGAGTACGTCAAATCGTTACAGAGCCAAATACAA--G--G 929
Query 1941 TCGACAGGACAGGGTATGATGCCGCCAATGATGTATGCAGGGAATACGCAACAGTTCATG 2000
| | | | | | | | |||||||||| |||| |||||||||||||||||||||
Sbjct 930 T--AT-G-A-----T--G-T-C-GCCAATGATGAATGCCGGGAATACGCAACAGTTCATG 975
Query 2001 CCCCACATGGCCATGGATATGAACCGGCCTCCGCCATTCATACCTTTCCCCGACACACCA 2060
||||| |||||||||||||||||||| ||||| ||||||||||||||||||| |||| |
Sbjct 976 CCCCATATGGCCATGGATATGAACCGACCTCCTCCATTCATACCTTTCCCCGGCACATCT 1035
Query 2061 TTTCCTAGGCCGGCTCAAATGGC-GGATGTAGATCCATCATATCCAGCACCGCGCTACCC 2119
||||||| ||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 1036 TTTCCTATGCCGGCTCAAATGGCAGG-TGTAGGTCCATCATATCCAGCACCGCGCTACCC 1094
Query 2120 TTTATCCGG-CATTCAAACCTTTGACCCATCCAGAGTCCATTTACGAAGTCCGCAGCCTA 2178
||| ||| |||||| |||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 1095 TTT-TCCCAACATTCAGACCTTTGACCCATCCAGAGTCCGTTTACCAAGCCCGCAGCCTA 1153
Query 2179 ACCCGGTGTCGAACCAGCCACAGTTTCCGGCTTACATGAATCCCTATAGCCAGTTTGCTG 2238
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 ACCCGGTGTCGAACCAGCCTCAGTTTCCGGCTTACATGAATCCCTATAGCCAGTTTGCTG 1213
Query 2239 ATCTCCACCAGTTGCAACAACCTCCTCCTCCTCCATTTCAG 2279
|| |||||||||||||||||||||||||||||||||||||
Sbjct 1214 GTCCCCACCAGTTGCAACAACCTCCTCCTCCTCCATTTCAG 1254
Score = 795 bits (430), Expect = 0.0
Identities = 1072/1354 (79%), Gaps = 155/1354 (11%)
Strand=Plus/Plus
Query 2637 TGCAATTTGATGAGTCTGATATTAGAGTTTGGATTTTGGATTGAAATTAGGGGTGAAGAT 2696
|||||||||||||||||||| ||| ||||||| ||||| ||||||||||| ||||||||
Sbjct 2 TGCAATTTGATGAGTCTGATGCTAGGGTTTGGA-TTTGGTTTGAAATTAGGCGTGAAGAT 60
Query 2697 GATGTGGTGGAGCTCTTATGGAAAAGCGGCCAAGTCGTTCAAAGCAGCCAGACAC--AGA 2754
||| | |||||||| |||||| ||||||||||||| ||| || || ||| |||| |||
Sbjct 61 GATATAGTGGAGCTTTTATGGCAAAGCGGCCAAGTAGTTGGAACCAACCAAACACATAGA 120
Query 2755 -GATCC-A--TTCCTCCTCCCATTTTCCGCGGCAGCGGAAGCAGG-AGCGGTGAAGAAAC 2809
|||| | ||||||||||||| |||||||||||||||| || || || |||||||
Sbjct 121 CAATCCTACGATCCTCCTCCCATTCTCCGCGGCAGCGGAAG-TGGCAGAGGAGAAGAAAA 179
Query 2810 TGCTCTCCC--TC-C-GCCTCC-CCTGCATCCTTC-TCAGCAGATTCTCTTTATCCAGGA 2863
||||| ||| || | ||||| ||| || ||| | |||||| | |||||| || || ||
Sbjct 180 TGCTC-CCCTTTCACAACCTCCGCCT-CA-CCTGCATCAGCAAAATCTCTTCATTCAAGA 236
Query 2864 AGACGAAATAG-CGTCTTGGCTTTACCATCCTCT-CCTCCAAGATTATCTT-TCCTCCG- 2919
|| |||||| | || ||||| ||||| || | || |||| | ||| || | ||| |
Sbjct 237 AGGCGAAAT-GTATTCGTGGCTACACCATTCT-TACCGCCAAAACTAT-TTCTGCTCAGA 293
Query 2920 GC--GTC-ACTTCTACTCCGGCTACTCA-CCGACAAGGTTCCGTCTCTCTGGCACCACCA 2975
| || || || |||||||||||||| ||| ||| ||||| |||||||||||||| |
Sbjct 294 ACTTCTCAAC-TCCACTCCGGCTACTCACCCG-CAAAGTTCCATCTCTCTGGCACCA-CG 350
Query 2976 CCACCACTCAGTGCTCCGTACGGTCAGATTACCGCTGCCAGAAGGACAGATAATTTTATG 3035
|| ||| | | | || || | ||| | | | | || | | || ||||||
Sbjct 351 TCA-GACT-A-T-CGCC--AC-G--AGA--A--G--G---G-CGG--A-A-AACTTTATG 387
Query 3036 AACTTCTTGAGGCTTAA-AGGGAACATACTTACCGGCGGTAGAG-T--TGAAGCTGG--- 3088
||||||| | ||| ||| |||||||||| ||||||||||||||| | |||||||||
Sbjct 388 AACTTCTCGTGGC-TAAGAGGGAACATATTTACCGGCGGTAGAGTTGATGAAGCTGGACC 446
Query 3089 G-C-----CGGTGGTGATAGAATCGACGCAGGTAGGCTC-AAGCGCGA---CCCCGTCGT 3138
| | ||||||| | |||||||| |||||||||||| || | ||| |||| || |
Sbjct 447 GTCGTTTTCGGTGGTAAGAGAATCGATGCAGGTAGGCTCGAA-CACGACCCCCCCTTCTT 505
Query 3139 CTTCAGCCACTGAATCCTGTGTAATACCAG-TGACTCACGGCACCGAGAGTCGAGCAACG 3197
|||| ||||||||||| ||||||||||||| | || | ||||||| ||||| | |
Sbjct 506 CTTCTGCCACTGAATCATGTGTAATACCAGCT-ACAGAGGGCACCGCGAGTC--G--A-- 558
Query 3198 GTCATTGGCGGAGTATCCCGTACTTTTGCAGTTCCCGGTTTTGGTAGGAGGGGAAAGGCG 3257
| || ||| | | ||||| |||| || | | ||||| ||| ||||||||||
Sbjct 559 G----TGTCGG-G-A------ACTTTGGCAGCTCATGATCTTGGTCGGAAGGGAAAGGCG 606
Query 3258 GTGGCGATCGAGACGGCTGGAACATCATCTTCGGGGGTATGCAAGGCCGAAACAGAGCCG 3317
|||||| | ||| |||| |||||| ||||||| || || |||||||||||||||||||||
Sbjct 607 GTGGCGGTTGAGGCGGCCGGAACACCATCTTCAGGAGTGTGCAAGGCCGAAACAGAGCCG 666
Query 3318 GTTCGA-ATACAACCGGAGACTGAGACGGAAATTTCCGAAGACAGGGAGCGAAAGGAGAG 3376
|||| | |||||||| || | | |||| | | ||||| | | ||| | |||
Sbjct 667 GTTC-AGATACAACC--AG-C--A-ACGG--A-GT-CGAAG-C---TA---AAA-GCGAG 707
Query 3377 AGAAGAAACCATTGTCGAAATCCAGGGAACTGAAGAAGCTCGTGGTTCAACGTCTAGGAA 3436
|||||||||| | || |||||||||||||||||||||||||||||||| ||
Sbjct 708 AGAAGAAACC-----C---AT----GGAACTGAAGAAGCTCGTGGTTCAACGTCTAGAAA 755
Query 3437 GAGGTCACGAGCTGCAGAAATGCATAACCTCGCCGAAAGGAGAAGGAGAGAAAAGATCAA 3496
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 GAGATCACGAACTGCAGAAATGCATAACCTCGCCGAAAGGAGAAGGAGAGAAAAGATCAA 815
Query 3497 CGAGAAGATGAAGACTCTGCAAGAACTCATTCCTCGCTGCAACAAGTCTACTAAAGTTTC 3556
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 816 CGAGAAGATGAAGACTCTGCAACAACTCATTCCTCGCTGCAACAAGTCTACTAAAGTTTC 875
Query 3557 AACGCTGGAAGATGTTATCGAGTACATGAAATCACTACAGATG-CAAATACAGATGATGT 3615
||||||||| |||| |||||||||| | ||||| |||||| | |||||||| | | ||
Sbjct 876 AACGCTGGATGATGCTATCGAGTACGTCAAATCGTTACAGA-GCCAAATACA-A-G--GT 930
Query 3616 CGATGGGTCATGGTATGATGCCACCGATGATGAATG-CGGAGAATATGCAACAGTTCATG 3674
|| | || | | |||| |||||||||| ||| ||||| |||||||||||||
Sbjct 931 --AT--G--AT-G--T--CGCCA---ATGATGAATGCCGG-GAATACGCAACAGTTCATG 975
Query 3675 CCCCACATGGCCATGGGGATGAACCGGCCTCCTCCATTCATACATTTCCCTGGCACAGCT 3734
||||| |||||||||| |||||||| |||||||||||||||| |||||| |||||| ||
Sbjct 976 CCCCATATGGCCATGGATATGAACCGACCTCCTCCATTCATACCTTTCCCCGGCACATCT 1035
Query 3735 TTTCCTAGGCCGGGTCATATGGCAGGTGTAGGTCCATCATATCCAGCATCGCGCTACCCT 3794
||||||| ||||| ||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1036 TTTCCTATGCCGGCTCAAATGGCAGGTGTAGGTCCATCATATCCAGCACCGCGCTACCCT 1095
Query 3795 TTTCCAAACACACA-AGCTTCTGACCCACCCAGAGTCCAATTACCAAGTCTGGAGACTGA 3853
||||| |||| || | ||| ||||||| ||||||||| |||||||| | | || || |
Sbjct 1096 TTTCCCAACATTCAGACCTT-TGACCCATCCAGAGTCCGTTTACCAAGCCCGCAGCCT-A 1153
Query 3854 TAACCCGGTGCCAAACCAGCCTCTA-TTTCCGGCTTACATGAATCCTTATAGCCAGTTTG 3912
| ||||||| | |||||||||| | |||||||||||||||||||| |||||||||||||
Sbjct 1154 -A-CCCGGTGTCGAACCAGCCTC-AGTTTCCGGCTTACATGAATCCCTATAGCCAGTTTG 1210
Query 3913 TTGGTCTCCACCAGATGCAACAACCTCCTCCTCC 3946
||||| ||||||| |||||||||||||||||||
Sbjct 1211 CTGGTCCCCACCAGTTGCAACAACCTCCTCCTCC 1244
Score = 608 bits (329), Expect = 2e-172
Identities = 547/643 (85%), Gaps = 51/643 (8%)
Strand=Plus/Plus
Query 390 GGAACTGAAGAAGCTCGTGGTTCAACGTCCAGGAAGAGGTCACGAGCTGCAGAAATGCAT 449
||||||||||||||||||||||||||||| || ||||| |||||| ||||||||||||||
Sbjct 721 GGAACTGAAGAAGCTCGTGGTTCAACGTCTAGAAAGAGATCACGAACTGCAGAAATGCAT 780
Query 450 AACCTTGCCGAAAGGAGAAGGAGAGAAAAGATCAACGAGAAGATGAAGACTCTGCAAGAA 509
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 781 AACCTCGCCGAAAGGAGAAGGAGAGAAAAGATCAACGAGAAGATGAAGACTCTGCAACAA 840
Query 510 CTCATTCCTCGCTGCAACAAGTCTACTAAAGTTTCAACGCTGGATGCTGCTATCGAGTAC 569
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 841 CTCATTCCTCGCTGCAACAAGTCTACTAAAGTTTCAACGCTGGATGATGCTATCGAGTAC 900
Query 570 GTCAAATGGCTACAGAGCCAAATACAAATGATCTTGATGG-GCCAAGGTATGATGCCTTC 628
||||||| | ||||||||||||||||| | | | |||| ||||| | ||||
Sbjct 901 GTCAAATCGTTACAGAGCCAAATACAAG-G-TAT-GATGTCGCCAA--T--GATG----- 948
Query 629 GATGATGAATGAGGAAAATATGCAAGAGTTCATGCCCCACATGGCCATGAAGATGATGGG 688
| ||| | |||| || |||| ||||||||||||| ||||||||| ||| |||
Sbjct 949 -A--ATGCC-G-GGAA--TACGCAACAGTTCATGCCCCATATGGCCATG--GAT-ATGAA 998
Query 689 TATGAACAGACCTCCATTCATACCTTCTCCC-GGCACACCTTTTCCTA-GCCCGGCTCAA 746
|| | |||||||||||||||| |||| |||||| ||||||||| ||| |||||||
Sbjct 999 CC-GACCT--CCTCCATTCATACCTT-TCCCCGGCACATCTTTTCCTATGCC-GGCTCAA 1053
Query 747 ATAGCGGGTGTAGGTCCATCTCAAGCATATCCAGCAGCGCGCTACCCTTTTCCCAACATT 806
|| || |||||||||||||| | ||||||||| |||||||||||||||||||||||
Sbjct 1054 ATGGCAGGTGTAGGTCCATC--A----TATCCAGCACCGCGCTACCCTTTTCCCAACATT 1107
Query 807 CAGACCTTTGACCCATCCAGAGTCCGTTTACCAAGTCCG--G--T-----GGT-T--AAC 854
||||||||||||||||||||||||||||||||||| ||| | | ||| | |||
Sbjct 1108 CAGACCTTTGACCCATCCAGAGTCCGTTTACCAAGCCCGCAGCCTAACCCGGTGTCGAAC 1167
Query 855 CAGACTCACTTTCCGGCTTACATGAATCCCTATAGCCATTTTGTTGGTCACCACCAGATG 914
||| |||| ||||||||||||||||||||||||||||| |||| ||||| ||||||| ||
Sbjct 1168 CAGCCTCAGTTTCCGGCTTACATGAATCCCTATAGCCAGTTTGCTGGTCCCCACCAGTTG 1227
Query 915 CTGCAACCTCCTCCTCC---ATTGCAGAGTCAAACAACACCACAGCTGAGTTCCGGCCAG 971
| |||||||||||||| ||| ||| ||||||||||| |||| ||||||||||| |||
Sbjct 1228 CAACAACCTCCTCCTCCTCCATTTCAGGGTCAAACAACATCACAACTGAGTTCCGGGCAG 1287
Query 972 GCAAGTAGTAGCAAGGAACCTGAGGATAAAGACAGCCAACCAA 1014
||||||||||||||||||||||||||| | || | ||||||||
Sbjct 1288 GCAAGTAGTAGCAAGGAACCTGAGGATCAGGAGAACCAACCAA 1330
Score = 311 bits (168), Expect = 5e-83
Identities = 198/212 (93%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 4688 CCAGGGAACTGAAGAAGCTCGTGGTTCAACATCTAGGAAGAGATCACGAGCTGCAGAAAT 4747
||| |||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||
Sbjct 717 CCATGGAACTGAAGAAGCTCGTGGTTCAACGTCTAGAAAGAGATCACGAACTGCAGAAAT 776
Query 4748 GCATAACCTCGCCGAAAGGAGAAGGAGAGAAAAGATCAACGAGAAGATGAAGACTCTGCA 4807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GCATAACCTCGCCGAAAGGAGAAGGAGAGAAAAGATCAACGAGAAGATGAAGACTCTGCA 836
Query 4808 AGAACTCATTCCTCGCTGCAACAAGTCTACTAAAGTTTCAACGCTGGAAGATGTTATAGA 4867
| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 837 ACAACTCATTCCTCGCTGCAACAAGTCTACTAAAGTTTCAACGCTGGATGATGCTATCGA 896
Query 4868 GTACGTGAAATC-TCTAGAGATGC-AAATACA 4897
|||||| ||||| | || ||| || |||||||
Sbjct 897 GTACGTCAAATCGT-TACAGA-GCCAAATACA 926
Score = 270 bits (146), Expect = 9e-71
Identities = 308/379 (81%), Gaps = 39/379 (10%)
Strand=Plus/Plus
Query 5009 GAATACGCAACAGTTCATGCCCCACATGGCCATGGGGATGAATCAGA-CTCCTGCATTCA 5067
|||||||||||||||||||||||| |||||||||| ||||| | || ||||| ||||||
Sbjct 957 GAATACGCAACAGTTCATGCCCCATATGGCCATGGATATGAA-CCGACCTCCTCCATTCA 1015
Query 5068 TACC-TT----------TC----CCTAGGCAGGCTCATATGGCGGGTGTAGGTCCATCAT 5112
|||| || || |||| || |||||| ||||| ||||||||||||||||
Sbjct 1016 TACCTTTCCCCGGCACATCTTTTCCTATGCCGGCTCAAATGGCAGGTGTAGGTCCATCAT 1075
Query 5113 ATCCACCACCGCACAACCCTTTTCCAAACATTCAGACCTTTGACCCATCCAGAGGTAGGT 5172
||||| |||||| | |||||||||| |||||||||||||||||||||||||||| | ||
Sbjct 1076 ATCCAGCACCGCGCTACCCTTTTCCCAACATTCAGACCTTTGACCCATCCAGAG-TCCGT 1134
Query 5173 T-ACAAAGTCCGCAGCCTAATCCGGTGCCGAACC-GACCTCAG----------A--TGAA 5218
| || ||| ||||||||||| |||||| |||||| | |||||| | ||||
Sbjct 1135 TTACCAAGCCCGCAGCCTAACCCGGTGTCGAACCAG-CCTCAGTTTCCGGCTTACATGAA 1193
Query 5219 TCCTTATAGCCAGTTTG-TAGG-CCACCACCAGATACAACAACCTTCTTTTCCTCCATTG 5276
||| ||||||||||||| | || || ||||||| | ||||||||| || |||||||||
Sbjct 1194 TCCCTATAGCCAGTTTGCT-GGTCC-CCACCAGTTGCAACAACCTCCTCCTCCTCCATTT 1251
Query 5277 CAGAGTCAAACAACATCACAGCTGAGCTTC-GGCCAGGCAAGTAGTAGCAAGGAACCTGA 5335
||| |||||||||||||||| ||||| ||| || ||||||||||||||||||||||||||
Sbjct 1252 CAGGGTCAAACAACATCACAACTGAG-TTCCGGGCAGGCAAGTAGTAGCAAGGAACCTGA 1310
Query 5336 TGATCAGAACAACCAACCA 5354
|||||| | |||||||||
Sbjct 1311 GGATCAGGAGAACCAACCA 1329
> AT4G28815.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14228719-14230288 FORWARD
LENGTH=924
Length=924
Score = 355 bits (192), Expect = 2e-96
Identities = 240/263 (91%), Gaps = 4/263 (2%)
Strand=Plus/Plus
Query 5019 CAGTTCATGCCCCACATGGCCATGGGGATGAATCAGACTCCTGCATTCATACCTTTCCCT 5078
|||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||
Sbjct 613 CAGTTCATGCCCCACATGGCCATGGGTATGAATCAGCCTCCTGCATACATACCTTTCCCT 672
Query 5079 AGGCAGGCTCATATGGCGGGTGTAGGTCCATCATATCCACCACCGC-ACAACCCTTTTCC 5137
|| ||||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 673 AGCCAGGCTCATATGGCGGGTGTAGGTCCATCATATCCACCACCGCGATA-CCCTTTTCC 731
Query 5138 AAACATTCAGACCTTTGACCCATCCAGAGGTAGGTTACAAAGTCCGCAGCCTAATCCGGT 5197
||||||||||||||||||||||||||||| | ||||||||||||| |||||||| |||||
Sbjct 732 AAACATTCAGACCTTTGACCCATCCAGAGTTTGGTTACAAAGTCCACAGCCTAACCCGGT 791
Query 5198 GCCGAACCGACCTCAGATGAATCCTTATAGCCAGTTTGTAGGCCACCACCAGATACAACA 5257
| |||||| ||||||||||||||||||| | |||||||| || ||||| ||||| |||||
Sbjct 792 GTCGAACCAACCTCAGATGAATCCTTATGGTCAGTTTGTTGGTCACCATCAGATGCAACA 851
Query 5258 ACCTTCTTT-TCCTCCATTGCAG 5279
| || ||| |||||||||||||
Sbjct 852 ATCT-CTTCCTCCTCCATTGCAG 873
Score = 342 bits (185), Expect = 2e-92
Identities = 207/217 (95%), Gaps = 3/217 (1%)
Strand=Plus/Plus
Query 4681 CCG-GAATCCAGGGAACTGAAGAAGCTCGTGGTTCAACATCTAGGAAGAGATCACGAGCT 4739
||| ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 394 CCGAGAATCCAGGGAACTGAAGAAGCTCGAGGTTCAACGTCTAGGAAGAGGTCACGAGCT 453
Query 4740 GCAGAAATGCATAACCTCGCCGAAAGGAGAAGGAGAGAAAAGATCAACGAGAAGA-TGAA 4798
|||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||
Sbjct 454 GCAGAAATGCATAACCTCGCCGAAAGGAGACGGAGAGAAAAGATCAACGAGA-GAATGAA 512
Query 4799 GACTCTGCAAGAACTCATTCCTCGCTGCAACAAGTCTACTAAAGTTTCAACGCTGGAAGA 4858
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 513 GACTCTGCAACAACTCATTCCTCGCTGCAACAAGTCTACTAAAGTTTCAATGCTGGAAGA 572
Query 4859 TGTTATAGAGTACGTGAAATCTCTAGAGATGCAAATA 4895
|||||| ||||||||||||||||||||||||||||||
Sbjct 573 TGTTATCGAGTACGTGAAATCTCTAGAGATGCAAATA 609
Score = 340 bits (184), Expect = 6e-92
Identities = 206/216 (95%), Gaps = 3/216 (1%)
Strand=Plus/Plus
Query 3392 CGA-AATCCAGGGAACTGAAGAAGCTCGTGGTTCAACGTCTAGGAAGAGGTCACGAGCTG 3450
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 395 CGAGAATCCAGGGAACTGAAGAAGCTCGAGGTTCAACGTCTAGGAAGAGGTCACGAGCTG 454
Query 3451 CAGAAATGCATAACCTCGCCGAAAGGAGAAGGAGAGAAAAGATCAACGAGAAGA-TGAAG 3509
||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||
Sbjct 455 CAGAAATGCATAACCTCGCCGAAAGGAGACGGAGAGAAAAGATCAACGAGA-GAATGAAG 513
Query 3510 ACTCTGCAAGAACTCATTCCTCGCTGCAACAAGTCTACTAAAGTTTCAACGCTGGAAGAT 3569
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 514 ACTCTGCAACAACTCATTCCTCGCTGCAACAAGTCTACTAAAGTTTCAATGCTGGAAGAT 573
Query 3570 GTTATCGAGTACATGAAATCACTACAGATGCAAATA 3605
|||||||||||| ||||||| ||| |||||||||||
Sbjct 574 GTTATCGAGTACGTGAAATCTCTAGAGATGCAAATA 609
Score = 291 bits (157), Expect = 7e-77
Identities = 332/412 (81%), Gaps = 29/412 (7%)
Strand=Plus/Plus
Query 197 TCAT-CAGGAAGAAGAAATGGT-GTCTTGGCTTCACCAT-CATCTCCGCCAGGATTATGT 253
|||| |||||||| ||||| || ||||||| || ||| || ||||| || |||||| |
Sbjct 212 TCATCCAGGAAGACGAAAT-GTCTTCTTGGCCCCATCATCCA-CTCCGTCAAGATTATTT 269
Query 254 CTGCTC-CAAAATTAT-CTACTCCATTCCCGCTACTAACCCGCAAAGTTCCGTCTCCCTG 311
||||| || |||| || |||| ||| ||| || | ||||| ||||||||||| |||
Sbjct 270 GTGCTCTGAACTTTATGCT--TCCACTCCGGCTCCTCATCCGCAGAGTTCCGTCTCTCTG 327
Query 312 G-A--ACCACCACCACTGCC-CC--CCAGTGCTCCCTATATTCTGCCGGCGTCGAGACT- 364
| | |||||||||| || || |||||||| || || | | | | | | ||
Sbjct 328 GCACCACCACCACCAAAACCACCATCCAGTGCT-CC-GTA--CGGTCAGATTATCG-CTC 382
Query 365 C-ACATGTCAGCTTCGTGGTGTACAGGGAACTGAAGAAGCTCGTGGTTCAACGTCCAGGA 423
| | | || ||| || | | |||||||||||||||||||| ||||||||||| ||||
Sbjct 383 CAAGAAGT--GCTCCG-AGAATCCAGGGAACTGAAGAAGCTCGAGGTTCAACGTCTAGGA 439
Query 424 AGAGGTCACGAGCTGCAGAAATGCATAACCTTGCCGAAAGGAGAAGGAGAGAAAAGATCA 483
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 440 AGAGGTCACGAGCTGCAGAAATGCATAACCTCGCCGAAAGGAGACGGAGAGAAAAGATCA 499
Query 484 ACGAGAAG-ATGAAGACTCTGCAAGAACTCATTCCTCGCTGCAACAAGTCTACTAAAGTT 542
||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 500 ACGAG-AGAATGAAGACTCTGCAACAACTCATTCCTCGCTGCAACAAGTCTACTAAAGTT 558
Query 543 TCAACGCTGGATGCTGCTATCGAGTACGTCAAATGGCTACAGA-GCCAAATA 593
|||| |||||| | || |||||||||||| |||| ||| ||| || |||||
Sbjct 559 TCAATGCTGGAAGATGTTATCGAGTACGTGAAATCTCTAGAGATGC-AAATA 609
Score = 279 bits (151), Expect = 1e-73
Identities = 196/217 (90%), Gaps = 5/217 (2%)
Strand=Plus/Plus
Query 1718 CGA-AATCCAGGGAACTGAAGAAGCTCGTGGTTCAACGTCCAGGAAGAGGTCAAGAACTG 1776
||| |||||||||||||||||||||||| ||||||||||| |||||||||||| || |||
Sbjct 395 CGAGAATCCAGGGAACTGAAGAAGCTCGAGGTTCAACGTCTAGGAAGAGGTCACGAGCTG 454
Query 1777 CAGAAATGCATAATTTCGCCGAAAGGAGACGGAGAGAAAAGATCAACGAGA-ATATAAAG 1835
||||||||||||| |||||||||||||||||||||||||||||||||||| | || |||
Sbjct 455 CAGAAATGCATAACCTCGCCGAAAGGAGACGGAGAGAAAAGATCAACGAGAGA-ATGAAG 513
Query 1836 ACTCTGCAAGAACTCATTCCTCGCTGCAACAAGTCCACTAAAGTTTCAACGCTGGATGAT 1895
||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 514 ACTCTGCAACAACTCATTCCTCGCTGCAACAAGTCTACTAAAGTTTCAATGCTGGAAGAT 573
Query 1896 GCTATCGAGTACGTCAAATGGCTACAGA-GCCAAATA 1931
| |||||||||||| |||| ||| ||| || |||||
Sbjct 574 GTTATCGAGTACGTGAAATCTCTAGAGATGC-AAATA 609
Score = 254 bits (137), Expect = 9e-66
Identities = 255/306 (83%), Gaps = 31/306 (10%)
Strand=Plus/Plus
Query 4036 GCCAGACAGAGATACCCTCTTCTGATCCTAC-TCCCATTCTCCGCGGCAGGGGAAGTAGA 4094
|||||||| |||||||||| || |||||| | |||||||||||| ||||| |||||| |
Sbjct 101 GCCAGACACAGATACCCTCCTCCGATCCT-CTTCCCATTCTCCGTGGCAGCGGAAGTGGC 159
Query 4095 GG-CGGAGAAGAAAATGTTCCGCTTCCGCCTCCTCTGCCTCCACCGCATCATCAAAATCT 4153
|| | ||||||||||| ||||||||||||||||||| | | |||||| |||||
Sbjct 160 GGAC-GAGAAGAAAATACTCCGCTTCCGCCTCCTCTG-------C-C-TCATCAGAATCT 209
Query 4154 CTTCATCCAGGAAGATGATATGTCTTCTTGGATTCATCATCATCCTCTCCTTCAAGATTA 4213
||||||||||||||| || |||||||||||| | |||||||| |||| |||||||||
Sbjct 210 CTTCATCCAGGAAGACGAAATGTCTTCTTGGCC-C--CATCATCCACTCCGTCAAGATTA 266
Query 4214 TTTATGCTCTCAACTTTATGCTTCCACTCCGGCTCCTCACCCGCAGAGTTCCGTCCCTCT 4273
||| |||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 267 TTTGTGCTCTGAACTTTATGCTTCCACTCCGGCTCCTCATCCGCAGAGTTCCGTCTCTCT 326
Query 4274 GGCACCACCAC-A--A---------TCCAGTGCTCCGTACGGTCAGATTATTATCGCTCC 4321
||||||||||| | | |||||||||||||||||||||||||| ||||||
Sbjct 327 GGCACCACCACCACCAAAACCACCATCCAGTGCTCCGTACGGTCAGATTAT---CGCTCC 383
Query 4322 AAGAAG 4327
||||||
Sbjct 384 AAGAAG 389
Score = 137 bits (74), Expect = 9e-31
Identities = 172/218 (79%), Gaps = 11/218 (5%)
Strand=Plus/Plus
Query 725 ACCTTTTCCTAGCCCGGCTCAAATAGCGGGTGTAGGTCCATCTCAAGCATATCCAGCAGC 784
|||||| ||||||| |||||| || ||||||||||||||| | |||||||| || |
Sbjct 663 ACCTTTCCCTAGCCAGGCTCATATGGCGGGTGTAGGTCCA--T----CATATCCACCACC 716
Query 785 GCGCTACCCTTTTCCCAACATTCAGACCTTTGACCCATCCAGAGTCCGTTTACCAAGTCC 844
||| ||||||||||| ||||||||||||||||||||||||||||| | |||| ||||||
Sbjct 717 GCGATACCCTTTTCCAAACATTCAGACCTTTGACCCATCCAGAGTTTGGTTACAAAGTCC 776
Query 845 GGTGGTTAACCAGACTCACTTTCCGGCTT-ACATGAATCCCTATAGCCATTTTGTTGGTC 903
| ||||| | | | || | | | |||||||| ||| | || ||||||||||
Sbjct 777 ACAGCCTAACCCGG-TGTCGAACCAACCTCAGATGAATCCTTATGGTCAGTTTGTTGGTC 835
Query 904 ACCACCAGATGCTGCAA-C-CT-CCTCCTCCATTGCAG 938
|||| ||||||| ||| | || |||||||||||||||
Sbjct 836 ACCATCAGATGCAACAATCTCTTCCTCCTCCATTGCAG 873
Score = 134 bits (72), Expect = 1e-29
Identities = 217/280 (78%), Gaps = 38/280 (14%)
Strand=Plus/Plus
Query 2762 TCCTCCTCCCATTTTCCGCGGCAGCGGAA---GCAGGAGCGGTGAAGAAACTGCTCTC-C 2817
||||| ||||||| |||| |||||||||| || ||| | | ||||||| | ||| | |
Sbjct 126 TCCTCTTCCCATTCTCCGTGGCAGCGGAAGTGGC-GGA-C-GAGAAGAAAATACTC-CGC 181
Query 2818 CTCCGCCTCCCCTGCATCCTTCTCAGCAGATTCTCTTTATCCAGGAAGACGAAATAG-CG 2876
||||||| ||| | | | |||| |||| |||||| ||||||||||||||||| | |
Sbjct 182 TTCCGCCT--CCT-C-TGC--CTCATCAGAATCTCTTCATCCAGGAAGACGAAAT-GTCT 234
Query 2877 TCTTGGCTTTACCATCCTCTCC-TCCAAGATTATCTT-TCCTCCG-GCGTCA--CTTCTA 2931
||||||| | ||||| |||| | ||||||||| || | ||| | | | | |||| |
Sbjct 235 TCTTGGCCCCATCATCCACTCCGT-CAAGATTAT-TTGTGCTCTGAACTTTATGCTTCCA 292
Query 2932 CTCCGGCTACTCA-CCGACAAG-GTTCCGTCTCTCTGGCACCACCACCACCA---C---- 2982
|||||||| |||| ||| | || ||||||||||||||||||||||||||||| |
Sbjct 293 CTCCGGCTCCTCATCCG-C-AGAGTTCCGTCTCTCTGGCACCACCACCACCAAAACCACC 350
Query 2983 -TC-AGTGCTCCGTACGGTCAGATTACCGCTGCCA-GAAG 3019
|| |||||||||||||||||||||| |||| ||| ||||
Sbjct 351 ATCCAGTGCTCCGTACGGTCAGATTATCGCT-CCAAGAAG 389
Score = 76.8 bits (41), Expect = 2e-12
Identities = 50/54 (93%), Gaps = 1/54 (2%)
Strand=Plus/Plus
Query 3968 TTTGAAAAATAGGGGTGAAGATGATATAGTGGAGCTCTTTTGGAAGATTGGCCA 4021
|||| ||| |||||||||||||||||||||||||||||| || |||||||||||
Sbjct 52 TTTG-AAACTAGGGGTGAAGATGATATAGTGGAGCTCTTATGTAAGATTGGCCA 104
> AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14218260-14220222 FORWARD
LENGTH=1360
Length=1360
Score = 143 bits (77), Expect = 2e-32
Identities = 104/117 (89%), Gaps = 2/117 (2%)
Strand=Plus/Plus
Query 1593 ACTTTGGCAGTTCCTGGTCTTGGTCAGAAGGGAAAGGCGGTGGTGATTGAAACGGCCGGA 1652
||||| ||||||||||||||||||| || |||||||||||||| |||||| ||||| |||
Sbjct 673 ACTTTTGCAGTTCCTGGTCTTGGTCCGAGGGGAAAGGCGGTGGCGATTGAGACGGCGGGA 732
Query 1653 ACTCCATCTTCAGGAG-TGTGCAAGGCCGAAACAGAGCCGGTTCAGATACAACCAGC 1708
|| | ||||| || | |||||||||||||||||||||||||||||| |||||||||
Sbjct 733 ACACAATCTT-GGGGGTTGTGCAAGGCCGAAACAGAGCCGGTTCAGAGACAACCAGC 788
Score = 137 bits (74), Expect = 9e-31
Identities = 107/122 (88%), Gaps = 6/122 (5%)
Strand=Plus/Plus
Query 4992 CCGATGATGTATACATCG-A-ATAC-GCAACAGTTCATGCCCCACATGGCCATGGGGATG 5048
|||||||||||| | | | |||| ||||||| ||||||||||||||||||||| |||
Sbjct 1093 CCGATGATGTATGCGGGGAATATACAACAACAGTACATGCCCCACATGGCCATGGGTATG 1152
Query 5049 AATCAGACTCCTGCATTCATACCTTTCCCTAGGCAGGCTCATATGGCGG--G-TGTAGGT 5105
|||| | |||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1153 AATCGGCCTCCTGCATTCATACCTTTCCCTAGGCAGGCTCATATGGCGGAAGGTGTAGGT 1212
Query 5106 CC 5107
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Sbjct 1213 CC 1214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 268694146708
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5