BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945149

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G28775.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   580    3e-165


> AT4G28775.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:14214778-14215381 
FORWARD LENGTH=604
Length=604

 Score =  580 bits (314),  Expect = 3e-165
 Identities = 370/396 (93%), Gaps = 8/396 (2%)
 Strand=Plus/Plus

Query  69   AACAAAACATCTTTGTGGAAGATAAGGAAGATCATAACAGAGAAAAGTGATGGTTGGTTG  128
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  100  AACAAAACATCTTTGTGGAAGATAAGGAAGATCTTAACAGAGAAAAGTGATGGTTGGTTG  159

Query  129  GACTTTGATAATAACAACGATATTGAGAATCATATTTTGAGAAGTTTGGGCGAACCCAT-  187
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| 
Sbjct  160  GACTTTGATAATAACAACGATATCGAGAATCATATTTTGAGAAGTTTGGGCGAATCCATA  219

Query  188  -TG-GTAGAGTGAAAAAAGA-TCCTATAGAGATCAAGATCGACGATTACGATACAGGGAG  244
             |  |||||||||||||||| || |||| |||| |||||||||||||| |||||||||||
Sbjct  220  ATTAGTAGAGTGAAAAAAGACTC-TATAAAGATAAAGATCGACGATTATGATACAGGGAG  278

Query  245  CCAGTACGAGGTAACCTTAGGGTACAATCATAAATCTGATATATATTACATTGGAGCATT  304
            |||| ||||||||||||| ||||| |||||| ||||||||| ||||||||||||| ||||
Sbjct  279  CCAGCACGAGGTAACCTTCGGGTATAATCATGAATCTGATACATATTACATTGGATCATT  338

Query  305  ATGGAGATTGAAGGAGCTTGCTGTTGGAGATGAAATAGGATTGTTTTACGATCCTATTTC  364
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  339  ATGGAGATTGAAGGAGCTTGCTGCTGGAGATGAAATAGGATTGTTTTACGATCCTATTTC  398

Query  365  AAAGAACTTGTGTTTCTCTGTGTTGAAACAAGCAAAACCCTGCTCT-ATCaaaaaaaaGA  423
            |||||| |||||||||||||||||||||||||||||| |||||| | |||||||||  ||
Sbjct  399  AAAGAATTTGTGTTTCTCTGTGTTGAAACAAGCAAAATCCTGCT-TGATCAAAAAAT-GA  456

Query  424  AACAAGCAAAACCCTGATGATCACAACTTGTTTAAT  459
            || |||||||||||||||||||||||||||||||||
Sbjct  457  AATAAGCAAAACCCTGATGATCACAACTTGTTTAAT  492



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21916738564


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5