BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945158
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28700.1 | Symbols: AMT1;4 | ammonium transporter 1;4 | chr4... 2307 0.0
> AT4G28700.1 | Symbols: AMT1;4 | ammonium transporter 1;4 | chr4:14161681-14163195
FORWARD LENGTH=1515
Length=1515
Score = 2307 bits (1249), Expect = 0.0
Identities = 1431/1520 (94%), Gaps = 7/1520 (0%)
Strand=Plus/Plus
Query 21 ATGGCGACGAG-TCTCTCTTGCTCTGCCTCTGATCTGATTCC-TCTACTATCCGGCGGAG 78
|||||| || | |||||||||||||||||||||||||||||| | ||||||| || ||||
Sbjct 1 ATGGCGTCG-GCTCTCTCTTGCTCTGCCTCTGATCTGATTCCAT-TACTATCAGGTGGAG 58
Query 79 CCAATGCCACCGCCGCAGCCGCTGCCGCTGAATTCATCTGCGGGAGATTCGACACAGTCG 138
|||| |||||||| ||||| || |||||||||| ||||||||||||||||||||||||||
Sbjct 59 CCAACGCCACCGCAGCAGCAGCCGCCGCTGAATACATCTGCGGGAGATTCGACACAGTCG 118
Query 139 CCGGGAAATTCACCGACGCGGCTTACGCCATCGACAACACTTACCTTCTCTTCTCCGCTT 198
||||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 119 CCGGGAAATTCACTGATGCGGCTTACGCAATCGACAACACTTACCTTCTCTTCTCTGCTT 178
Query 199 ACCTCGTTTTCGCGATGCAGCTAGGATTCGCCATGCTCTGTGCCGGATCTGTACGTGCTA 258
|||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| |
Sbjct 179 ACCTCGTTTTCGCGATGCAGCTCGGTTTCGCCATGCTCTGTGCCGGATCCGTACGTGCAA 238
Query 259 AAAACACGATGAACATTATGCTCACCAACGTCATCGACGCTGCAGCCGGAGGTCTGTTCT 318
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 239 AAAACACGATGAACATTATGCTCACGAACGTCATCGACGCTGCAGCCGGAGGTCTCTTCT 298
Query 319 ATTACCTCTTCGGTTTCGCTTTCGCTTTTGGATCTCCTTCTAATGGATTCATCGGAAAAC 378
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 299 ATTATCTCTTCGGTTTCGCTTTTGCTTTTGGATCTCCTTCTAATGGATTCATCGGAAAAC 358
Query 379 ATTTCTTTGGAATGTATGATTTTCCTAAACCTACGTTTGATTATCCTTATTTTCTATATC 438
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 359 ATTTCTTTGGAATGTATGATTTTCCTCAACCTACGTTTGATTATCCTTATTTTCTATATC 418
Query 439 AATGGACTTTCGCTATCGCCGCCGCCGGAATCACCAGTGGTTCGATCGCGGAGAGGACTC 498
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 419 AATGGACTTTCGCTATCGCCGCCGCTGGAATCACGAGTGGTTCGATAGCGGAGAGGACTC 478
Query 499 AGTTCGTGGCGTATTTGATCTACTCTGCTTTCCTCACGGGTCTTGTTTACCCGATTGTGT 558
||||||| |||||||||||||| ||| ||||| | |||||||||||||||||||||||||
Sbjct 479 AGTTCGTTGCGTATTTGATCTATTCTTCTTTCTTGACGGGTCTTGTTTACCCGATTGTGT 538
Query 559 CGCATTGGTTTTGGTCTTCTGATGGTTGGGCTTCTCCGGCTAGATCTGAGAACCTTCTGT 618
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 539 CGCATTGGTTTTGGTCTTCTGATGGTTGGGCGTCTCCGGCTAGATCTGAGAACCTTCTGT 598
Query 619 TTCAATCAGGTGTGATTGATTTCGCTGGCTCTGGTGTTGTTCATATGGTTGGAGGTATTG 678
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 599 TTCAATCAGGTGTGATTGATTTCGCTGGCTCTGGTGTTGTTCATATGGTTGGTGGTATTG 658
Query 679 CTGGTTTATGGGGAGCTTTAATTGAAGGACCAAGAATTGGTCGGTTTGGAGATGGGGGTA 738
||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||
Sbjct 659 CTGGTTTATGGGGAGCTTTAATTGAAGGACCTAGGATTGGTCGGTTTGGAGTTGGGGGTA 718
Query 739 AACCGGTTACGTTGCGTGGTCATAGTGCTACGTTGGTTGTTCTTGGAACGTTTTTGTTAT 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AACCGGTTACGTTGCGTGGTCATAGTGCTACGTTGGTTGTTCTTGGAACGTTTTTGTTAT 778
Query 799 GGTTCGGATGGTACGGGTTTAACCCTGGATCGTTCGCAACCATTTTTAAGTCGTATGGAG 858
||||||||||||||||||||||||| || ||||| ||||| ||||||||| ||||||| |
Sbjct 779 GGTTCGGATGGTACGGGTTTAACCCGGGCTCGTTTGCAACTATTTTTAAGGCGTATGGGG 838
Query 859 AGACTCCGGGGAACTCGTTTTACGGACAGTGGAGCGCGGTTGGAAGAACGGCGGTTACAA 918
||||||| |||| ||||||||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct 839 AGACTCCAGGGAGCTCGTTTTACGGACAATGGAGCGCAGTTGGGAGAACCGCGGTAACAA 898
Query 919 CCACGTTAGCTGGTTGCACGGCGGCGCTAACGACTCTGTTTGGGAAAAGACTTATTGATG 978
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 899 CTACGTTAGCTGGTTGCACGGCGGCGTTAACGACTCTGTTTGGGAAAAGACTTATTGATG 958
Query 979 GGTATTGGAATGTAACTGATGTTTGTAATGGTTTGTTAGGCGGATTCGCTGCTATAACTA 1038
||||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||
Sbjct 959 GGTATTGGAATGTAACTGATGTTTGCAATGGTTTGTTAGGCGGGTTTGCGGCTATAACTA 1018
Query 1039 GCGGATGTTCGGTTGTGGAACCGTGGGCCGCGCTTATATGCGGGTTTGTAGCCGCGTGGG 1098
|||||||||||||||||||||||||||| |||||| |||| |||||||||||||| ||||
Sbjct 1019 GCGGATGTTCGGTTGTGGAACCGTGGGCTGCGCTTGTATGTGGGTTTGTAGCCGCATGGG 1078
Query 1099 TGCTGATGGGATTCAATAGACTAGCTGAAAAGCTCCAATTCGACGATCCGTTGGAAGCGG 1158
|||||||||||| |||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 1079 TGCTGATGGGATGCAATAGACTAGCGGAAAAGCTCCAATTTGATGATCCGTTGGAAGCGG 1138
Query 1159 CTCAGCTTCACGGCGGTTGCGGCGCGTGGGGGATTATTTTCACCGGGTTGTTCGCGGAGA 1218
||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1139 CTCAGCTTCACGGTGGTTGTGGTGCGTGGGGGATTATTTTCACCGGGTTGTTCGCGGAGA 1198
Query 1219 AAAGATACATTGCTGAGATCTTTGGAGGGGACCCGAACAGGCCTTACGGGTTGCTAATGG 1278
||||||||||||| |||||||||||||| |||||||| ||||||| ||| ||||||||||
Sbjct 1199 AAAGATACATTGCCGAGATCTTTGGAGGCGACCCGAATAGGCCTTTCGGATTGCTAATGG 1258
Query 1279 GAGGAGGAGGTAGGTTGCTTGCGGCGCACGTCGTTCAGATTTTGGTGATTACGGGATGGG 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1259 GAGGAGGAGGTAGGTTGCTTGCGGCGCACGTCGTTCAGATTTTGGTGATTACGGGTTGGG 1318
Query 1339 TTAGTGTGACAATGGGGACTCTATTTTATATTTTGCATAAGCTGAAACTGTTGAGGATAC 1398
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1319 TTAGTGTGACAATGGGGACTCTGTTTTTTATTTTGCATAAGCTGAAACTGTTGAGGATAC 1378
Query 1399 CGGCGGAGGATGAGATCGCCGGGGTGGATCCGACGAGTCATGGAGGGTTGGCTTATATGT 1458
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 1379 CGGCGGAGGATGAGATAGCTGGGGTGGATCCGACGAGTCACGGAGGGTTGGCTTATATGT 1438
Query 1459 ACACAGAAGATGAGATCAGGAATGGGATCATGGTTAGGAGGGTGGGCGGTGATAATGCTC 1518
|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| ||
Sbjct 1439 ACACAGAAGATGAGATTAGGAATGGGATCATGGTTAGGAGAGTGGGTGGTGATAATGATC 1498
Query 1519 AAGGAAATGTACGTGTTTGA 1538
|| |||| ||||||||
Sbjct 1499 CC--AA-TGTAGGTGTTTGA 1515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77007636030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5