BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg945158 Length=1560 Score E Sequences producing significant alignments: (Bits) Value AT4G28700.1 | Symbols: AMT1;4 | ammonium transporter 1;4 | chr4... 2307 0.0 > AT4G28700.1 | Symbols: AMT1;4 | ammonium transporter 1;4 | chr4:14161681-14163195 FORWARD LENGTH=1515 Length=1515 Score = 2307 bits (1249), Expect = 0.0 Identities = 1431/1520 (94%), Gaps = 7/1520 (0%) Strand=Plus/Plus Query 21 ATGGCGACGAG-TCTCTCTTGCTCTGCCTCTGATCTGATTCC-TCTACTATCCGGCGGAG 78 |||||| || | |||||||||||||||||||||||||||||| | ||||||| || |||| Sbjct 1 ATGGCGTCG-GCTCTCTCTTGCTCTGCCTCTGATCTGATTCCAT-TACTATCAGGTGGAG 58 Query 79 CCAATGCCACCGCCGCAGCCGCTGCCGCTGAATTCATCTGCGGGAGATTCGACACAGTCG 138 |||| |||||||| ||||| || |||||||||| |||||||||||||||||||||||||| Sbjct 59 CCAACGCCACCGCAGCAGCAGCCGCCGCTGAATACATCTGCGGGAGATTCGACACAGTCG 118 Query 139 CCGGGAAATTCACCGACGCGGCTTACGCCATCGACAACACTTACCTTCTCTTCTCCGCTT 198 ||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||| Sbjct 119 CCGGGAAATTCACTGATGCGGCTTACGCAATCGACAACACTTACCTTCTCTTCTCTGCTT 178 Query 199 ACCTCGTTTTCGCGATGCAGCTAGGATTCGCCATGCTCTGTGCCGGATCTGTACGTGCTA 258 |||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| | Sbjct 179 ACCTCGTTTTCGCGATGCAGCTCGGTTTCGCCATGCTCTGTGCCGGATCCGTACGTGCAA 238 Query 259 AAAACACGATGAACATTATGCTCACCAACGTCATCGACGCTGCAGCCGGAGGTCTGTTCT 318 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 239 AAAACACGATGAACATTATGCTCACGAACGTCATCGACGCTGCAGCCGGAGGTCTCTTCT 298 Query 319 ATTACCTCTTCGGTTTCGCTTTCGCTTTTGGATCTCCTTCTAATGGATTCATCGGAAAAC 378 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 299 ATTATCTCTTCGGTTTCGCTTTTGCTTTTGGATCTCCTTCTAATGGATTCATCGGAAAAC 358 Query 379 ATTTCTTTGGAATGTATGATTTTCCTAAACCTACGTTTGATTATCCTTATTTTCTATATC 438 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 359 ATTTCTTTGGAATGTATGATTTTCCTCAACCTACGTTTGATTATCCTTATTTTCTATATC 418 Query 439 AATGGACTTTCGCTATCGCCGCCGCCGGAATCACCAGTGGTTCGATCGCGGAGAGGACTC 498 ||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| Sbjct 419 AATGGACTTTCGCTATCGCCGCCGCTGGAATCACGAGTGGTTCGATAGCGGAGAGGACTC 478 Query 499 AGTTCGTGGCGTATTTGATCTACTCTGCTTTCCTCACGGGTCTTGTTTACCCGATTGTGT 558 ||||||| |||||||||||||| ||| ||||| | ||||||||||||||||||||||||| Sbjct 479 AGTTCGTTGCGTATTTGATCTATTCTTCTTTCTTGACGGGTCTTGTTTACCCGATTGTGT 538 Query 559 CGCATTGGTTTTGGTCTTCTGATGGTTGGGCTTCTCCGGCTAGATCTGAGAACCTTCTGT 618 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 539 CGCATTGGTTTTGGTCTTCTGATGGTTGGGCGTCTCCGGCTAGATCTGAGAACCTTCTGT 598 Query 619 TTCAATCAGGTGTGATTGATTTCGCTGGCTCTGGTGTTGTTCATATGGTTGGAGGTATTG 678 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 599 TTCAATCAGGTGTGATTGATTTCGCTGGCTCTGGTGTTGTTCATATGGTTGGTGGTATTG 658 Query 679 CTGGTTTATGGGGAGCTTTAATTGAAGGACCAAGAATTGGTCGGTTTGGAGATGGGGGTA 738 ||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||| Sbjct 659 CTGGTTTATGGGGAGCTTTAATTGAAGGACCTAGGATTGGTCGGTTTGGAGTTGGGGGTA 718 Query 739 AACCGGTTACGTTGCGTGGTCATAGTGCTACGTTGGTTGTTCTTGGAACGTTTTTGTTAT 798 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 AACCGGTTACGTTGCGTGGTCATAGTGCTACGTTGGTTGTTCTTGGAACGTTTTTGTTAT 778 Query 799 GGTTCGGATGGTACGGGTTTAACCCTGGATCGTTCGCAACCATTTTTAAGTCGTATGGAG 858 ||||||||||||||||||||||||| || ||||| ||||| ||||||||| ||||||| | Sbjct 779 GGTTCGGATGGTACGGGTTTAACCCGGGCTCGTTTGCAACTATTTTTAAGGCGTATGGGG 838 Query 859 AGACTCCGGGGAACTCGTTTTACGGACAGTGGAGCGCGGTTGGAAGAACGGCGGTTACAA 918 ||||||| |||| ||||||||||||||| |||||||| ||||| ||||| ||||| |||| Sbjct 839 AGACTCCAGGGAGCTCGTTTTACGGACAATGGAGCGCAGTTGGGAGAACCGCGGTAACAA 898 Query 919 CCACGTTAGCTGGTTGCACGGCGGCGCTAACGACTCTGTTTGGGAAAAGACTTATTGATG 978 | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 899 CTACGTTAGCTGGTTGCACGGCGGCGTTAACGACTCTGTTTGGGAAAAGACTTATTGATG 958 Query 979 GGTATTGGAATGTAACTGATGTTTGTAATGGTTTGTTAGGCGGATTCGCTGCTATAACTA 1038 ||||||||||||||||||||||||| ||||||||||||||||| || || |||||||||| Sbjct 959 GGTATTGGAATGTAACTGATGTTTGCAATGGTTTGTTAGGCGGGTTTGCGGCTATAACTA 1018 Query 1039 GCGGATGTTCGGTTGTGGAACCGTGGGCCGCGCTTATATGCGGGTTTGTAGCCGCGTGGG 1098 |||||||||||||||||||||||||||| |||||| |||| |||||||||||||| |||| Sbjct 1019 GCGGATGTTCGGTTGTGGAACCGTGGGCTGCGCTTGTATGTGGGTTTGTAGCCGCATGGG 1078 Query 1099 TGCTGATGGGATTCAATAGACTAGCTGAAAAGCTCCAATTCGACGATCCGTTGGAAGCGG 1158 |||||||||||| |||||||||||| |||||||||||||| || |||||||||||||||| Sbjct 1079 TGCTGATGGGATGCAATAGACTAGCGGAAAAGCTCCAATTTGATGATCCGTTGGAAGCGG 1138 Query 1159 CTCAGCTTCACGGCGGTTGCGGCGCGTGGGGGATTATTTTCACCGGGTTGTTCGCGGAGA 1218 ||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1139 CTCAGCTTCACGGTGGTTGTGGTGCGTGGGGGATTATTTTCACCGGGTTGTTCGCGGAGA 1198 Query 1219 AAAGATACATTGCTGAGATCTTTGGAGGGGACCCGAACAGGCCTTACGGGTTGCTAATGG 1278 ||||||||||||| |||||||||||||| |||||||| ||||||| ||| |||||||||| Sbjct 1199 AAAGATACATTGCCGAGATCTTTGGAGGCGACCCGAATAGGCCTTTCGGATTGCTAATGG 1258 Query 1279 GAGGAGGAGGTAGGTTGCTTGCGGCGCACGTCGTTCAGATTTTGGTGATTACGGGATGGG 1338 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1259 GAGGAGGAGGTAGGTTGCTTGCGGCGCACGTCGTTCAGATTTTGGTGATTACGGGTTGGG 1318 Query 1339 TTAGTGTGACAATGGGGACTCTATTTTATATTTTGCATAAGCTGAAACTGTTGAGGATAC 1398 |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 1319 TTAGTGTGACAATGGGGACTCTGTTTTTTATTTTGCATAAGCTGAAACTGTTGAGGATAC 1378 Query 1399 CGGCGGAGGATGAGATCGCCGGGGTGGATCCGACGAGTCATGGAGGGTTGGCTTATATGT 1458 |||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||| Sbjct 1379 CGGCGGAGGATGAGATAGCTGGGGTGGATCCGACGAGTCACGGAGGGTTGGCTTATATGT 1438 Query 1459 ACACAGAAGATGAGATCAGGAATGGGATCATGGTTAGGAGGGTGGGCGGTGATAATGCTC 1518 |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| || Sbjct 1439 ACACAGAAGATGAGATTAGGAATGGGATCATGGTTAGGAGAGTGGGTGGTGATAATGATC 1498 Query 1519 AAGGAAATGTACGTGTTTGA 1538 || |||| |||||||| Sbjct 1499 CC--AA-TGTAGGTGTTTGA 1515 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77007636030 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5