BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945175
Length=1315
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28550.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 2119 0.0
AT2G20440.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 1260 0.0
> AT4G28550.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily
protein | chr4:14110884-14113748 FORWARD LENGTH=1685
Length=1685
Score = 2119 bits (1147), Expect = 0.0
Identities = 1243/1291 (96%), Gaps = 0/1291 (0%)
Strand=Plus/Plus
Query 1 AAAGAAAAGTGAAGCTTTGAATGATTTGTTGTGGATTTATGTGGAAATCCGGAGGTGAAG 60
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 111 AAAAAAAAGTGAAGCTTTGTATGATTTGTTGTGGATTTATGTGGAAATCCGGAGGTGAAG 170
Query 61 ATTTGCAAGGTTTCTATCCAGTTAGATCAGAATGTGTAGCAGATGTTCCCAGGACTCGAT 120
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 171 ATTTGCAAGGTTTCTATCCAGTTAGAGAAGAATGTGTAGCAGATGTTCCCAGGACTCGAT 230
Query 121 TTAAATCAAGGGCTGGTAAAACTCTAAGTGCTAGAAAATGGCACGCTGCGTTTACTGAAG 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 231 TTAAATCAAGGGCTGGTAAAACTCTTAGTGCTAGAAAATGGCACGCTGCGTTTACTGGAG 290
Query 181 ATGGACATTTGGATATGGAAAGAGTTCTTCGCCGTATACAGCAAGGGGGAATTCATCCCT 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 291 ATGGACATTTGGATATGGAAAGAGTTCTTCGCCGTATACAGCGAGGGGGAATTCATCCCT 350
Query 241 CAATCAAAGGAGAGGTTTGGGAGTTTTTGTTAGGAGGTTACGATCCGGACAGCACGTTTG 300
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||
Sbjct 351 CAATCAAAGGAGAGGTTTGGGAGTTTTTGTTAGGAGCTTACGATCCAGACAGCACTTTTG 410
Query 301 AAGAACGGAATAAGTTGAGGAATCACAGAAGGGAGCAGTATTATGGTTGGAAAGAAGAAT 360
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 411 AAGAACGGAACAAGTTGAGGAATCACAGAAGGGAGCAGTATTATGCTTGGAAAGAAGAAT 470
Query 361 GTCGGAATATGGTTCCTCTTGTTGGTAGCGGCAAGTTTGTCACGATGGCAGTTGTTGCAG 420
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 471 GTAAGAATATGGTTCCTCTTGTTGGTAGCGGAAAGTTTGTCACGATGGCAGTTGTTGCGG 530
Query 421 AAGATGGGCAGCCATTAGAAGAATCCTCAGTAGAGGATCAAGGATGGCTTGTGAAAACCG 480
|||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||
Sbjct 531 AAGATGGGCAGCCATTAGAAGAATCCTCAGTAGACAATCAAGAATGGGTTGTGAAAACCG 590
Query 481 CTATAACAGACAAGCGTGTGCTCCAGTGGATGCTTGTCTTGAGTCAAATCGGTCTCGATG 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 591 CTATAACAGACAAGCGTGTGCTCCAGTGGATGCTTGTGTTGAGTCAAATCGGTCTCGATG 650
Query 541 TGGTTAGAACGGACCGGTATCTCTGCTTTTATGAGAGTGAAAGTAATCAAGCAAGACTAT 600
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TTGTTAGAACGGATCGGTATCTCTGCTTTTATGAGAGTGAAAGTAATCAAGCAAGACTAT 710
Query 601 GGGATATTCTTTCCATCTATACATGGTTAAATCCTGATATTGGCTATGTTCAAGGAATGA 660
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 711 GGGATATTCTTTCCATCTATACATGGTTAAATCCTGATATTGGCTATGTTCAGGGAATGA 770
Query 661 ATGACATATGTTCCCCGATGATAATCCTACTTGAAGATGAAGCCGACGCTTTCTGGTGCT 720
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 ACGACATATGTTCCCCCATGATAATCCTACTTGAAGATGAAGCCGACGCTTTCTGGTGCT 830
Query 721 TTGAGCGTGCAATGCGAAGACTAAGAGAAAATTTCAGGACAACGGCGACATCAATGGGCG 780
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 831 TTGAGCGTGCAATGCGAAGACTAAGAGAAAATTTCAGGACAACAGCAACATCAATGGGCG 890
Query 781 TCCAGACTCAGCTGGGTATGCTCTCACAGGTCATTAAAACCGTTGATCCTCGGCTACATC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 891 TCCAGACTCAGCTGGGTATGCTCTCACAGGTCATTAAAACCGTTGATCCTCGGCTCCATC 950
Query 841 AGCATCTTGAGGATCTCGACGGTGGAGAGTATCTGTTTGCTATACGAATGTTGATGGTAT 900
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 AACATCTTGAGGATCTCGACGGTGGAGAGTATCTGTTTGCTATACGAATGTTGATGGTAT 1010
Query 901 TGTTCAGGAGAGAGTTCTCCTTCCTTGATGCTTTGTACCTTTGGGAGCTGATGTGGGCTA 960
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 TGTTCAGAAGAGAGTTTTCCTTCCTTGATGCTTTGTACCTTTGGGAGCTGATGTGGGCTA 1070
Query 961 TGGAGTACAATCCAAACAAGTTTGCATCATACGAAGAACCACAGAACATAAACAACTCCT 1020
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1071 TGGAATACAATCCAAACAAGTTTGCATCATACGAAGAACCACAGAACATGAACAACTCCT 1130
Query 1021 CAGGACACGATCCGAGGTTACTCAAGCAGTATGGAAAGTTTGAGAGAAAATATATAAAGA 1080
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1131 CAGGACAGGATCCGAGGTTACTTAAGCAGTATGGAAAATTTGAGAGAAAATATATAAAGA 1190
Query 1081 ATGGCCAGAACGAGCAACACAACACGCTTGCTGTTTTTGTTGTAGCAAGCGTTCTTGAAA 1140
|||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 1191 GTGGCCAGAACGAGCAACACAACACGCTTGCTGTTTTTGTTGTGGCTAGTGTTCTTGAAA 1250
Query 1141 CAAAGAACAAACGTCTCTTGAAGGAAGCAAAAGGCCTAGATGACGTTGTTCAGATATTGG 1200
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1251 CAAAGAACAAACGTCTCTTGAAGGAAGCTAAAGGCCTAGATGACGTTGTTCAGATATTGG 1310
Query 1201 GCGGTATTGCAGGTAATTTGGACGCGAGAAAAGCATGTAAAGAAGCTTTGAAGATTCATG 1260
| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1311 GAGGTATTGCAGGTAATTTGGACGCGAGAAAAGCGTGTAAAGAAGCGTTGAAGATTCATG 1370
Query 1261 AAAAATTCCTGAAGAAGGCTAATAATAGGCA 1291
||||||||||||| |||||||||| || |||
Sbjct 1371 AAAAATTCCTGAAAAAGGCTAATAGTAAGCA 1401
> AT2G20440.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily
protein | chr2:8810741-8813523 REVERSE LENGTH=1711
Length=1711
Score = 1260 bits (682), Expect = 0.0
Identities = 1094/1294 (85%), Gaps = 23/1294 (2%)
Strand=Plus/Plus
Query 2 AAGAA-AAGTGAAGCTTTGAATGATTTGTTGTGGATTTATGTGGAAATCCGGAGGTGAAG 60
||||| ||| |||| ||||||| |||| || ||||||||||||||||||||||| ||||
Sbjct 123 AAGAAGAAG-GAAG-GTTGAATGTTTTGCTGCGGATTTATGTGGAAATCCGGAGGAGAAG 180
Query 61 ATTTGCAAGGTTTCTATCCAGTTAGATCAGAATGTGTAGCAGATGTTCCCAGGACTCGAT 120
|||||||||||||||||||||||||| | |||||| | |||||||||||||||| || |
Sbjct 181 ATTTGCAAGGTTTCTATCCAGTTAGACCTGAATGTCAACCAGATGTTCCCAGGACCCGTT 240
Query 121 TTAAATCAAGGGCTGGTAAA-ACTCTAAGTGCTAGAAAATGGCACGCTGCGTTTACTGAA 179
|||||||||||||||| ||| |||||||||||||||| |||||||||||| |||||||||
Sbjct 241 TTAAATCAAGGGCTGG-AAAGACTCTAAGTGCTAGAAGATGGCACGCTGCCTTTACTGAA 299
Query 180 GATGGACATTTGGATATGGAAAGAGTTCTTCGCCGTATACAGCAAGGGGGAATTCATCCC 239
||||| |||||||||||||||| ||| ||| | |||||||||| || |||||||||||
Sbjct 300 GATGGCCATTTGGATATGGAAAAAGTGCTTAGACGTATACAGCGCGGAGGAATTCATCCT 359
Query 240 TCAATCAAAGGAGAGGTTTGGGAGTTTTTGTTAGGAGGTTACGATCCGGACAGCACGTTT 299
|| |||||||| | ||||||||||||||||||||| | |||||||| |||||||| |||
Sbjct 360 TCCATCAAAGGCGCTGTTTGGGAGTTTTTGTTAGGATGCTACGATCCAGACAGCACTTTT 419
Query 300 GAAGAACGGAATA-AGTTGAGGAATCACAGAAGGGAGCAGTATTATGGTTGGAAAGAAGA 358
|| ||| |||| | | | |||||||| ||||||||||||||| || |||||||||||
Sbjct 420 GAGGAAAGGAACATACT-GAGGAATCGCAGAAGGGAGCAGTACGGTGCATGGAAAGAAGA 478
Query 359 ATGTCGGAATATGGTTCCTCTTGTTGGTAGCGGCAAGTTTGTCACGATGGCAGTTGTTGC 418
|||| ||| ||||||||| | ||||||| ||||||| ||||| |||||||| ||| |
Sbjct 479 ATGTAAGAAAATGGTTCCTGTCATTGGTAGTGGCAAGTACGTCACAATGGCAGTCGTT-C 537
Query 419 A-GAAGATGGGCAGCCATTAGAAGAATCCTCAGTAGAGGATCAAGGATGGCTTGTGAAAA 477
| ||| ||||| | ||| |||| ||||| || ||||| | ||||||||| | |||||||
Sbjct 538 AAGAAAATGGGAACCCAATAGACGAATCTTCTGTAGAAAACCAAGGATGGATCGTGAAAA 597
Query 478 CCGCTATAACAGACAAGCGTGTGCTCCAGTGGATGCT-TGTCTTGAGTCAAATCGGTCTC 536
| || | ||||| || | ||||| || |||||||| | || | || ||||| ||
Sbjct 598 ACACTGTTACAGATGAGAGAGTGCTACAATGGATGCTCTCACTACAC-CAGATCGGCCTT 656
Query 537 GATGTGGTTAGAACGGACCGGTATCTCTGCTTTTATGAGAGTGAAAGTAATCAAGCAAGA 596
||||| | |||||| || ||||||||||| |||||||||| ||| |||||||| ||| |
Sbjct 657 GATGTTGCTAGAACAGATCGGTATCTCTGTTTTTATGAGAATGATCGTAATCAATCAAAA 716
Query 597 CTATGGGATATTCTTTCCATCTATACATGGTTAAATCCTGATATTGGCTATGTTCAAGGA 656
|||||||| ||||| |||| ||||| ||||| |||| ||||||||| |||||||| |||
Sbjct 717 CTATGGGACGTTCTTGCCATATATACGTGGTTGAATCTTGATATTGGTTATGTTCAGGGA 776
Query 657 ATGAATGACATATGTTCCCCGATGATAATCCTACTT-GAAGATGAAGCCGACGCTTTCTG 715
|||||||| ||||||||||| ||||||||||| ||| || ||||||| ||||||||||||
Sbjct 777 ATGAATGATATATGTTCCCCAATGATAATCCT-CTTTGATGATGAAGGCGACGCTTTCTG 835
Query 716 GTGCTTTGAGCGTGCAATGCGAAGACTAAGAGAAAATTTCAGGACAACGGCGACATCAAT 775
|||||||||||| |||||||| ||||||||||||||||||||| |||| || ||||||||
Sbjct 836 GTGCTTTGAGCGGGCAATGCGGAGACTAAGAGAAAATTTCAGGGCAACAGCAACATCAAT 895
Query 776 GGGCGTCCAGACTCAGCTGGGTATGCTCTCACAGGTCATTAAAACCGTTGATCCTCGGCT 835
||| ||||||||||| |||||| ||||||||||||||||||| || || |||||||| ||
Sbjct 896 GGGTGTCCAGACTCAACTGGGTGTGCTCTCACAGGTCATTAAGACAGTGGATCCTCGTCT 955
Query 836 ACATCAGCATCTTGAGGATCTCGACGGTGGAGAGTATCTGTTTGCTATACGAATGTTGAT 895
||||| ||||| ||||||||||| ||||| |||||||| |||||||| || ||| ||||
Sbjct 956 CCATCAACATCTAGAGGATCTCGATGGTGGGGAGTATCTATTTGCTATTCGGATGCTGAT 1015
Query 896 GGTA-TTGTTCAGGAGAGAGTTCTCCTTCCTTGATGCTTTGTACCTTTGGGAGCTGATGT 954
|||| || ||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 1016 GGTACTT-TTCAGGAGAGAATTCTCTTTCCTTGACGCTTTGTACCTTTGGGAGCTGATGT 1074
Query 955 GGGCTATGGAGTACAATCCAAACAAGTTTGCATCATACGAAGAACCACAGAACATAAACA 1014
|||| |||||||||||||||| || ||||||| | ||||| |||| | | ||| |||||
Sbjct 1075 GGGCGATGGAGTACAATCCAACCATGTTTGCAACGTACGAGGAACTAGAAAACCGAAACA 1134
Query 1015 ACTCCTCAGGACACGATCCGAGGTTACTCAAGCAGTATGGAAAGTTTGAGAGAAAATATA 1074
|| | || | |||||| | |||||| || | |||||| |||||||| || ||||| |
Sbjct 1135 ACGCAGCAT--C-CGATCCCAAGTTACTAAAACGGTATGGCAAGTTTGAAAGGAAATACA 1191
Query 1075 TAAAGAATGGCCAGAACGAGCAACA-C--AACACGCTTGCTGTTTTTGTTGTAGCAAGCG 1131
|||| | ||| |||||||||||||| | |||||||||||||||||||| || |||||||
Sbjct 1192 TAAACAGTGGGCAGAACGAGCAACATCGCAACACGCTTGCTGTTTTTGTGGTCGCAAGCG 1251
Query 1132 TTCTTGAAACAAAGAACAAACGTCTCTTGAAGGAAGCAAAAGGCCTAGATGACGTTGTTC 1191
|||| | |||||||||||||||||||||||||| || |||||| |||| || |||||||
Sbjct 1252 TTCTACAGACAAAGAACAAACGTCTCTTGAAGGAGGCCAAAGGCTTAGACGATGTTGTTC 1311
Query 1192 AGATATTGGGCGGTATTGCAGGTAAT-TTGGACGCGAGAAAAGCATGTAAAGAAGCTTTG 1250
||||| | || | ||||| |||||| ||| |||| | |||||||||||||||||| |||
Sbjct 1312 AGATACTAGGAGACATTGCGGGTAATCTTG-ACGCCAAAAAAGCATGTAAAGAAGCGTTG 1370
Query 1251 AAGATTCATGAAAAATTCCTGAAGAAGGCTAATA 1284
||||| ||||||||||||||||| ||||||||||
Sbjct 1371 AAGATCCATGAAAAATTCCTGAAAAAGGCTAATA 1404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64708502505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5