BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945186
Length=1400
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28450.1 | Symbols: | nucleotide binding;protein binding | ... 2353 0.0
> AT4G28450.1 | Symbols: | nucleotide binding;protein binding
| chr4:14061459-14064708 REVERSE LENGTH=1750
Length=1750
Score = 2353 bits (1274), Expect = 0.0
Identities = 1360/1402 (97%), Gaps = 4/1402 (0%)
Strand=Plus/Plus
Query 1 CCTTTTCGTAGTCGTAAGCAATGAAGATTAAGACGTTATCAAGATCGGTTGATGAATACA 60
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 CCTTTTTGTAGTATTAAGCAATGAAGATTAAGACGTTATCAAGATCGGTTGATGAATACA 166
Query 61 CTCGAGAAAGAAGTCAGGATCTTCAGAGGGTCTTTCACAACTTCGACCCAAGTCTTCGGC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 167 CTCGAGAAAGAAGTCAGGATCTTCAGAGGGTCTTTCACAACTTCGACCCAAGTCTTCGAC 226
Query 121 CTATGGAGAAGGCTGTGGAATACCAGAGAGCTCTTACAGCTGCCAAATTAGAAAAGATAT 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 CTATGGAGAAGGCCGTGGAATACCAGAGAGCTCTTACAGCTGCCAAATTAGAAAAGATAT 286
Query 181 TTGCAAGGCCCTTTGTTGGAGCAATGGATGGTCATCGTGATGGAGTCTCATGTATGGCGA 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 TTGCAAGGCCGTTTGTTGGAGCAATGGATGGTCATCGTGATGGAGTCTCATGTATGGCGA 346
Query 241 AGAACCCAAATTACCTCAAAGGAATCTTCTCTGCTTCTATGGATGGAGATATTCGCCTTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 AGAACCCAAATTACCTCAAAGGAATCTTCTCTGCTTCTATGGATGGAGATATTCGCCTTT 406
Query 301 GGGATATCTCTTCAAGGCGTACAGTTTGCCAATTCCCTGGTCATCAAGGTGCTGTGCGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 GGGATATCTCTTCAAGGCGTACAGTTTGCCAATTCCCTGGTCATCAAGGTGCTGTGCGTG 466
Query 361 GTCTTACAGCATCAACCGATGGCAATGTATTGGTTTCATGCGGAACTGATTGCACTGTTC 420
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 467 GTCTTACTGCATCAACCGATGGAAATGTATTGGTTTCATGCGGAACTGATTGCACTGTTC 526
Query 421 GTTTGTGGAATGTTCCTCGTCCTACACTAGAAGATTCTACCATTTCATCTGAGAATTCCA 480
||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||| ||
Sbjct 527 GTTTGTGGAATGTTCCTCGTCCTTCACTTGAAGATTCTAGCATTTCATCTGAGAATTTCA 586
Query 481 TTGAGCCATCTGCAACTTATGTCTGGAAGAATGCTTTCTGGGCTGTTGATCATCAGTTTG 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TTGAGCCATCTGCAACCTATGTCTGGAAGAATGCTTTCTGGGCTGTTGATCATCAGTTTG 646
Query 541 AAGGTGACCTTTTTGCTACGGCCGGAGCTCAACTTGATATATGGAATCATAATAGGTCTC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 AAGGTGACCTTTTTGCTACGGCCGGAGCTCAACTTGATATATGGAATCATAATAGGTCTC 706
Query 601 AGCCAGTTCAGAGTTTCCAGTGGGGAACTGACTCTGTAATATCTGTTCGGTTTAATCCTG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 AGCCAGTTCAGAGTTTCCAGTGGGGAACTGACTCTGTAATATCTGTTCGGTTTAATCCTG 766
Query 661 GAGAGCCTGATATATTAGCTACATCTGCTAGCGACCGCAGCATAACCATATATGATCTCC 720
|||||||| || |||| |||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 767 GAGAGCCTAATTTATTGGCTACATCAGCTAGTGACCGGAGCATAACCATATATGATCTCC 826
Query 721 G-TATGTCTTCTGCGGCGAGGAAAATTATCATGATGACAAAAACAAATTCAATTGCATGG 779
| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 GCT-TGTCTTCTGCGGCAAGGAAAATTATCATGATGACAAAAACAAATTCAATTGCATGG 885
Query 780 AACCCCATGGAGCCTATGAACCTGACAGCTGCTAATGAAGATGGAAGTTGCTATAGCTTT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 AACCCCATGGAGCCTATGAACCTGACAGCTGCTAATGAAGATGGAAGTTGCTATAGCTTT 945
Query 840 GATGGTAGAAAGTTGGACGAAGCCAAGTGTGTGCATAAAGATCATGTTTCTGCAGTGATG 899
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 946 GATGGTAGAAAGTTGGACGAAGCCAAGTGCGTGCATAAAGATCATGTTTCTGCAGTGATG 1005
Query 900 GATATTGACTTTTCACCAACTGGTCGTGAATTTGTTACGGGTTCTTATGATCGATCTGTC 959
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1006 GATATTGACTTTTCACCGACTGGTCGTGAGTTTGTTACGGGTTCTTATGATCGATCTGTG 1065
Query 960 AGAATCTTCCCATACAATGGAGGTCACAGCAGGGAAATCTACCATACAAAGAGGATGCAG 1019
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1066 AGAATCTTCCCATACAATGGAGGACACAGCAGGGAAATCTACCATACAAAGAGGATGCAG 1125
Query 1020 AGAGTATTCTGTGTCAAGTATAGCTGTGATGCTACATATGTAATATCGGGCAGTGATGAC 1079
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 AGAGTATTCTGTGTCAAATATAGCTGTGATGCTACATATGTAATATCGGGCAGTGATGAC 1185
Query 1080 ACCAATCTCAGGCTATGGAAGGCAAAAGCATCAGAGCAATTGGGAGTTATTCTTCCAAGG 1139
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1186 ACCAATCTCAGGCTATGGAAGGCAAAGGCATCAGAGCAATTGGGAGTTATTCTTCCAAGG 1245
Query 1140 GAACAGAAGAAGCATGAGTACAACGAGGCTGTGAAGAACCGGTACAAGCATCTTCCTGAG 1199
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1246 GAACAAAAGAAGCATGAGTACAACGAGGCTGTGAAGAACCGGTACAAGCATCTTTCTGAG 1305
Query 1200 GTTAAGCGCATTGTGAGACACAGGCACTTGCCAAAACCAATATACAAAGCAATGGCG-AT 1258
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct 1306 GTTAAGCGCATTGTGAGACACAGGCACTTGCCAAAACCAATATACAAAGCGATGG-GTAT 1364
Query 1259 CATCCGAACCGTGAACGATTCGAAGAGAAGAAAAGAAGCTCGAAGGAAAGCTCACAGTGC 1318
||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1365 CATTCGAACTGTGAACGATTCGAAGAGAAGAAAAGAAGCACGAAGGAAAGCTCACAGTGC 1424
Query 1319 TCCAGGAACAGTGGTCACAAAACCTCTGCGCAAAAGAAAGATCATCAAAGAAGTCGAGTG 1378
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1425 TCCAGGAACAGTGGTCACAGCACCTCTGCGCAAAAGAAAGATCATCAAAGAAGTGGAGTG 1484
Query 1379 AGTTTACTCTTTCTCCGTTTGT 1400
| | ||||||||||||||||||
Sbjct 1485 ACTCTACTCTTTCTCCGTTTGT 1506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68975548830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5